MolNFT v1 · #313543 · protein
AlphaFold monomer V2.0 prediction for photosystem II protein D1 3 (Q8DIV4)
Q8DIV4: “AlphaFold monomer V2.0 prediction for photosystem II protein D1 3 (Q8DIV4)”. 4 pockets (best druggability 0.63). MolNFT v1 #313543 on GenesisL1: 3D structure, binding sites and pockets in GL1X.
- Accession
- Q8DIV4
- Type
- protein
- Length
- 360 residues
- Chains
- 1
- Collection
- MolNFT v1 / AlphaFold
- Contract
- 0xBf7491af3407816DFa88a5EA4c82e8A2B1D721eD
- Owner
- 0x4Ef77Afb5a3D9F41c95Be3227D1CC986CCb61835
- Molecule
- Photosystem II protein D1 3
- UniProt
- Q8DIV4
- Pockets
- 4 · best druggability 0.63
Structure
1 distinct chain · 54% helix, 3% strand (DSSP).
| Chain | Molecule | Type | Residues | Secondary structure | UniProt |
|---|---|---|---|---|---|
| A | Photosystem II protein D1 3 | protein | 360 | 54% helix, 3% strand | Q8DIV4 |
Pockets
4 pockets found on a 1 Å grid, 3 with a druggability of 0.5 or more.
| Volume (ų) | Druggability | Buriedness | Lining residues | Inside | |
|---|---|---|---|---|---|
| 1 | 83 | 0.63 | 0.90 | 19 | empty |
| 2 | 357 | 0.61 | 0.78 | 42 | empty |
| 3 | 248 | 0.59 | 0.79 | 32 | empty |
| 4 | 162 | 0.46 | 0.75 | 21 | empty |
Compared structures
- 7YQ7 · Crystal structure of photosystem II expressing psbA3 gene only · an experimental structure of the same protein · chain A against a, TM-score 0.93
- 5OJR · YCF48 bound to D1 peptide · an experimental structure of the same protein · chain A against F, TM-score 0.04
- 5OJR · YCF48 bound to D1 peptide · an experimental structure of the same protein · chain A against F, TM-score 0.04
Analyse
- Open in the research workbench: secondary structure, accessibility, pockets, interfaces, conservation, variants, modifications, peptides and crosslinks on the 3D structure
- Every structure of UniProt Q8DIV4
- Elsewhere: UniProt Q8DIV4 · AlphaFold DB Q8DIV4
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