Research workbench

AlphaFold monomer V2.0 prediction for photosystem II protein D1 3 (Q8DIV4)

Analyse AlphaFold monomer V2.0 prediction for photosystem II protein D1 3 (Q8DIV4) in the GL1X research workbench: secondary structure, accessibility, pockets, interfaces, conservation, variants, modifications, peptides, crosslinks and neighbours on the 3D structure.

Accession: Q8DIV4
Type: protein
Length: 360 residues
Chains: 1
Collection: MolNFT v1 / AlphaFold
Contract: 0xBf7491af3407816DFa88a5EA4c82e8A2B1D721eD
Owner: 0x4Ef77Afb5a3D9F41c95Be3227D1CC986CCb61835
Molecule: Photosystem II protein D1 3
UniProt: Q8DIV4
Pockets: 4 · best druggability 0.63

Structure

1 distinct chain · 54% helix, 3% strand (DSSP).

Chain	Molecule	Type	Residues	Secondary structure	UniProt
A	Photosystem II protein D1 3	protein	360	54% helix, 3% strand	Q8DIV4

Pockets

4 pockets found on a 1 Å grid, 3 with a druggability of 0.5 or more.

Pocket	Volume (Å³)	Druggability	Buriedness	Lining residues	Inside
1	83	0.63	0.90	19	empty
2	357	0.61	0.78	42	empty
3	248	0.59	0.79	32	empty
4	162	0.46	0.75	21	empty

Compared structures

7YQ7 · Crystal structure of photosystem II expressing psbA3 gene only · an experimental structure of the same protein · chain A against a, TM-score 0.93
5OJR · YCF48 bound to D1 peptide · an experimental structure of the same protein · chain A against F, TM-score 0.04
5OJR · YCF48 bound to D1 peptide · an experimental structure of the same protein · chain A against F, TM-score 0.04

Analyse

Open in the research workbench: secondary structure, accessibility, pockets, interfaces, conservation, variants, modifications, peptides and crosslinks on the 3D structure
Every structure of UniProt Q8DIV4
Elsewhere: UniProt Q8DIV4 · AlphaFold DB Q8DIV4

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