UniProt Q3JRA0
2-C-methyl-D-erythritol 2,4-cyclodiphosphate synthase (Q3JRA0)
2-C-methyl-D-erythritol 2,4-cyclodiphosphate synthase (UniProt Q3JRA0), EC 4.6.1.12: 20 experimental structures and 1 predicted model on GenesisL1, 16 ligands bound, 40 pockets. Binding sites, druggability and experiment against…
- UniProt
- Q3JRA0
- Protein
- 2-C-methyl-D-erythritol 2,4-cyclodiphosphate synthase
- EC
- 4.6.1.12
- Experimental structures
- 20
- Predicted models
- 1
- Ligands
- 16
- Pockets
- 40 · 10 records with a druggable one
Structures
21 records of Q3JRA0 in the MolNFT archive: 20 experimental, 1 predicted.
| Entry | Title | Method | Chains | Ligands | Pockets |
|---|---|---|---|---|---|
| 3K2X | Crystal structure of 2C-methyl-D-erythritol 2,4-cyclodiphosphate synthase from Burkholderia… | x-ray diffraction | A, B, C | ZN, I5A, CL, K | 4 (best 0.81) |
| 3K2X | Crystal structure of 2C-methyl-D-erythritol 2,4-cyclodiphosphate synthase from burkholderia… | x-ray diffraction | A, B, C | — | — |
| 3P0Z | Crystal structure of 2-C-methyl-D-erythritol 2,4-cyclodiphosphate synthase from Burkholderia… | x-ray diffraction | A, B, C | CL, ZN, MSR, CTN, K | 4 (best 0.82) |
| 3P0Z | Crystal structure of 2-C-methyl-D-erythritol 2,4-cyclodiphosphate synthase from burkholderia… | x-ray diffraction | A, B, C | — | — |
| 3P10 | Crystal structure of 2-C-methyl-D-erythritol 2,4-cyclodiphosphate synthase from Burkholderia… | x-ray diffraction | A, B, C | CL, ZN, CTN, F69, K | 4 (best 0.81) |
| 3P10 | Crystal structure of 2-C-methyl-D-erythritol 2,4-cyclodiphosphate synthase from burkholderia… | x-ray diffraction | A, B, C | — | — |
| 3QHD | Crystal structure of 2-C-METHYL-D-ERYTHRITOL 2,4-CYCLODIPHOSPHATE Synthase from BURKHOLDERIA… | x-ray diffraction | A, B, C | ZN, CL, CTN, MSR, 795, K | 4 (best 0.82) |
| 3QHD | Crystal structure of 2-C-methyl-D-erythritol 2,4-cyclodiphosphate synthase from burkholderia… | x-ray diffraction | A, B, C | — | — |
| 6MWF | Crystal structure of 2C-methyl-D-erythritol 2,4-cyclodiphosphate synthase (IspF) Burkholderia… | x-ray diffraction | A, B, C | ZN, SFY | 4 (best 0.83) |
| 6MWF | Crystal structure of 2C-methyl-D-erythritol 2,4-cyclodiphosphate synthase (ispf) burkholderia… | x-ray diffraction | A, B, C | ZN, SFY | — |
| 6MWI | Crystal structure of 2C-methyl-D-erythritol 2,4-cyclodiphosphate synthase (IspF) Burkholderia… | x-ray diffraction | A, B, C | ZN, EZL | 4 (best 0.82) |
| 6MWI | Crystal structure of 2C-methyl-D-erythritol 2,4-cyclodiphosphate synthase (ispf) burkholderia… | x-ray diffraction | A, B, C | ZN, EZL | — |
| 6MWJ | Crystal structure of 2C-methyl-D-erythritol 2,4-cyclodiphosphate synthase (IspF) Burkholderia… | x-ray diffraction | A, B, C | ZN, AZM | 4 (best 0.81) |
| 6MWJ | Crystal structure of 2C-methyl-D-erythritol 2,4-cyclodiphosphate synthase (ispf) burkholderia… | x-ray diffraction | A, B, C | ZN, AZM | — |
| 6MWK | Crystal structure of 2C-methyl-D-erythritol 2,4-cyclodiphosphate synthase (IspF) Burkholderia… | x-ray diffraction | A, B, C | ZN, K4Y, MG | 4 (best 0.82) |
| 6MWK | Crystal structure of 2C-methyl-D-erythritol 2,4-cyclodiphosphate synthase (ispf) burkholderia… | x-ray diffraction | A, B, C | ZN, K4Y | — |
| 6NMO | Crystal structure of 2C-methyl-D-erythritol 2,4-cyclodiphosphate synthase (IspF) Burkholderia… | x-ray diffraction | A, B, C | ZN, QMS | 4 (best 0.82) |
| 6NMO | Crystal structure of 2C-methyl-D-erythritol 2,4-cyclodiphosphate synthase (ispf) burkholderia… | x-ray diffraction | A, B, C | ZN, QMS | — |
| 6V3M | Crystal structure of 2C-methyl-D-erythritol 2,4-cyclodiphosphate synthase (IspF) Burkholderia… | x-ray diffraction | A, B, C | ZN, QOG, MLT | 4 (best 0.83) |
| 6V3M | Crystal structure of 2C-methyl-D-erythritol 2,4-cyclodiphosphate synthase (ispf) burkholderia… | x-ray diffraction | A, B, C | ZN, QOG, MLT | — |
| Q3JRA0 | AlphaFold monomer V2.0 prediction for 2-C-methyl-D-erythritol 2,4-cyclodiphosphate synthase (Q3JRA0) | predicted | A | — | — |
Ligands
- ZN · Zinc ion · in 16 records
- CL · Chloride ion · in 4 records
- K · Potassium ion · in 4 records
- CTN · 4-amino-1-beta-D-ribofuranosyl-2(1H)-pyrimidinone · in 3 records
- AZM · 5-acetamido-1,3,4-thiadiazole-2-sulfonamide · in 2 records
- EZL · 6-ethoxy-1,3-benzothiazole-2-sulfonamide · in 2 records
- K4Y · 4-amino-N-(6-methoxypyrimidin-4-yl)benzene-1-sulfonamide · in 2 records
- MLT · D-malate · in 2 records
- MSR · 4-(1H-imidazol-1-yl)phenol · in 2 records
- QMS · N-(quinolin-8-yl)methanesulfonamide · in 2 records
- QOG · 5-{[(propan-2-yl)carbamoyl]amino}-1,3,4-thiadiazole-2-sulfonamide · in 2 records
- SFY · 4-amino-N-(pyridin-2-yl)benzenesulfonamide · in 2 records
- 795 · 2-(pyridin-3-yl)-1,3-thiazole-4-carbaldehyde · in 1 record
- F69 · (2-thiophen-2-ylphenyl)methanol · in 1 record
- I5A · 5'-deoxy-5'-iodocytidine · in 1 record
- MG · Magnesium ion · in 1 record
Experiment against prediction
- 3K2X chain A against the predicted model Q3JRA0: TM-score 0.99, RMSD 0.37 Å
- 3K2X chain A against the predicted model Q3JRA0: TM-score 0.99, RMSD 0.37 Å
- 3K2X chain C against the predicted model Q3JRA0: TM-score 0.99, RMSD 0.39 Å
- 3K2X chain C against the predicted model Q3JRA0: TM-score 0.99, RMSD 0.39 Å
- 6NMO chain A against the predicted model Q3JRA0: TM-score 0.99, RMSD 0.48 Å
- 6NMO chain A against the predicted model Q3JRA0: TM-score 0.99, RMSD 0.48 Å
- 6MWI chain A against the predicted model Q3JRA0: TM-score 0.99, RMSD 0.49 Å
- 6MWI chain A against the predicted model Q3JRA0: TM-score 0.99, RMSD 0.49 Å
- 6MWF chain A against the predicted model Q3JRA0: TM-score 0.99, RMSD 0.50 Å
- 6MWF chain A against the predicted model Q3JRA0: TM-score 0.99, RMSD 0.50 Å
Elsewhere
GL1X is a live explorer of the GenesisL1 blockchain. Turn on JavaScript for search, charts and interactive views.