UniProt P25208
Nuclear transcription factor Y subunit beta (P25208)
Nuclear transcription factor Y subunit beta (UniProt P25208): 15 experimental structures and 1 predicted model on GenesisL1, 1 ligand bound, 8 pockets. Binding sites, druggability and experiment against prediction (TM-score) in…
- UniProt
- P25208
- Protein
- Nuclear transcription factor Y subunit beta
- Experimental structures
- 15
- Predicted models
- 1
- Ligands
- 1
- Pockets
- 8 · 2 records with a druggable one
Structures
16 records of P25208 in the MolNFT archive: 15 experimental, 1 predicted.
| Entry | Title | Method | Chains | Ligands | Pockets |
|---|---|---|---|---|---|
| 1N1J | Crystal structure of the NF-YB/NF-YC histone pair | x-ray diffraction | A | — | — |
| 1N1J | Crystal structure of the nf-YB/NF-yc histone pair | x-ray diffraction | A | — | — |
| 4AWL | The NF-Y transcription factor is structurally and functionally a sequence specific histone | x-ray diffraction | B | — | — |
| 4AWL | The nf-Y transcription factor is structurally and functionally a sequence specific histone | x-ray diffraction | B | — | — |
| 4CSR | High resolution crystal structure of the histone fold dimer (NF-YB)-(NF-YC) | x-ray diffraction | A | — | — |
| 4CSR | High resolution crystal structure of the histone fold dimer (nf-yb)-(nf-yc) | x-ray diffraction | A | — | — |
| 6QMP | Nf-YB/C heterodimer in complex with nf-ya peptide | x-ray diffraction | B | — | — |
| 6QMQ | NF-YB/C Heterodimer in Complex with NF-YA-derived Peptide Stabilized with C8-Hydrocarbon Linker | x-ray diffraction | B | — | 1 (best 0.40) |
| 6QMQ | Nf-YB/C heterodimer in complex with nf-ya-derived peptide stabilized with C8-hydrocarbon linker | x-ray diffraction | B | — | — |
| 6QMS | Nf-YB/C heterodimer in complex with nf-ya-derived peptide stabilized with C11-hydrocarbon linker | x-ray diffraction | B | — | — |
| 7AH8 | NF-Y bound to suramin inhibitor | x-ray diffraction | A, C | SVR | 1 (best 0.69) |
| 7AH8 | Nf-Y bound to suramin inhibitor | x-ray diffraction | A, C | SVR | — |
| 8QU2 | NF-YB/C Heterodimer in Complex with a 16-mer NF-YA-derived Peptide Stabilized with C8-Hydrocarbon… | x-ray diffraction | B | — | 2 (best 0.33) |
| 8QU3 | NF-YB/C Heterodimer in Complex with a 13-mer NF-YA-derived Peptide Stabilized with C8-Hydrocarbon… | x-ray diffraction | B | — | 1 (best 0.29) |
| 8QU4 | NF-YB/C Heterodimer in Complex with a 13-mer NF-YA-derived Peptide Stabilized with C8-Hydrocarbon… | x-ray diffraction | B | — | 1 (best 0.41) |
| P25208 | AlphaFold monomer V2.0 prediction for nuclear transcription factor Y subunit beta (P25208) | predicted | A | — | 2 (best 0.57) |
Ligands
- SVR · 8,8'-[carbonylbis[imino-3,1-phenylenecarbonylimino(4-methyl-3,1-phenylene)carbonylimino]]bis-1,3,5-naphthalenetrisulfonic acid · in 2 records
Experiment against prediction
- 7AH8 chain A against the predicted model P25208: TM-score 0.94, RMSD 1.02 Å
- 7AH8 chain A against the predicted model P25208: TM-score 0.94, RMSD 1.02 Å
- 4AWL chain B against the predicted model P25208: TM-score 0.94, RMSD 1.03 Å
- 4AWL chain B against the predicted model P25208: TM-score 0.94, RMSD 1.03 Å
- 7AH8 chain C against the predicted model P25208: TM-score 0.93, RMSD 1.23 Å
- 7AH8 chain C against the predicted model P25208: TM-score 0.93, RMSD 1.23 Å
- 6QMS chain B against the predicted model P25208: TM-score 0.93, RMSD 0.98 Å
- 1N1J chain A against the predicted model P25208: TM-score 0.93, RMSD 1.02 Å
- 1N1J chain A against the predicted model P25208: TM-score 0.93, RMSD 1.02 Å
- 4CSR chain A against the predicted model P25208: TM-score 0.93, RMSD 1.08 Å
Elsewhere
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