MolNFT v1 · #263931 · protein
AlphaFold monomer V2.0 prediction for nuclear transcription factor Y subunit beta (P25208)
P25208: “AlphaFold monomer V2.0 prediction for nuclear transcription factor Y subunit beta (P25208)”. 2 pockets (best druggability 0.57). MolNFT v1 #263931 on GenesisL1: 3D structure, binding sites and pockets in GL1X.
- Accession
- P25208
- Type
- protein
- Length
- 207 residues
- Chains
- 1
- Collection
- MolNFT v1 / AlphaFold
- Contract
- 0xBf7491af3407816DFa88a5EA4c82e8A2B1D721eD
- Owner
- 0x5B512bd394b2C26666F29ac411B48fc4F8882391
- Molecule
- Nuclear transcription factor Y subunit beta
- UniProt
- P25208
- Pockets
- 2 · best druggability 0.57
Structure
1 distinct chain · 35% helix, 1% strand (DSSP).
| Chain | Molecule | Type | Residues | Secondary structure | UniProt |
|---|---|---|---|---|---|
| A | Nuclear transcription factor Y subunit beta | protein | 207 | 35% helix, 1% strand | P25208 |
Pockets
2 pockets found on a 1 Å grid, 1 with a druggability of 0.5 or more.
| Volume (ų) | Druggability | Buriedness | Lining residues | Inside | |
|---|---|---|---|---|---|
| 1 | 378 | 0.57 | 0.74 | 29 | empty |
| 2 | 68 | 0.30 | 0.73 | 11 | empty |
Compared structures
- 4AWL · The nf-Y transcription factor is structurally and functionally a sequence specific histone · an experimental structure of the same protein · chain A against B, TM-score 0.43
- 4AWL · The NF-Y transcription factor is structurally and functionally a sequence specific histone · an experimental structure of the same protein · chain A against B, TM-score 0.43
- 7AH8 · NF-Y bound to suramin inhibitor · an experimental structure of the same protein · chain A against C, TM-score 0.41
- 7AH8 · Nf-Y bound to suramin inhibitor · an experimental structure of the same protein · chain A against C, TM-score 0.41
- 4CSR · High resolution crystal structure of the histone fold dimer (NF-YB)-(NF-YC) · an experimental structure of the same protein · chain A against A, TM-score 0.41
- 4CSR · High resolution crystal structure of the histone fold dimer (nf-yb)-(nf-yc) · an experimental structure of the same protein · chain A against A, TM-score 0.41
- 6QMS · NF-YB/C Heterodimer in Complex with NF-YA-derived Peptide Stabilized with C11-Hydrocarbon… · an experimental structure of the same protein · chain A against B, TM-score 0.41
- 6QMS · Nf-YB/C heterodimer in complex with nf-ya-derived peptide stabilized with C11-hydrocarbon… · an experimental structure of the same protein · chain A against B, TM-score 0.41
- 1N1J · Crystal structure of the NF-YB/NF-YC histone pair · an experimental structure of the same protein · chain A against A, TM-score 0.41
- 1N1J · Crystal structure of the nf-YB/NF-yc histone pair · an experimental structure of the same protein · chain A against A, TM-score 0.41
Analyse
- Open in the research workbench: secondary structure, accessibility, pockets, interfaces, conservation, variants, modifications, peptides and crosslinks on the 3D structure
- Every structure of UniProt P25208
- Elsewhere: UniProt P25208 · AlphaFold DB P25208
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