UniProt P12464
DNA-directed RNA polymerase subunit delta (P12464)
DNA-directed RNA polymerase subunit delta (UniProt P12464): 13 experimental structures and 1 predicted model on GenesisL1, 2 ligands bound, 5 pockets. Binding sites, druggability and experiment against prediction (TM-score) in…
- UniProt
- P12464
- Protein
- DNA-directed RNA polymerase subunit delta
- Experimental structures
- 13
- Predicted models
- 1
- Ligands
- 2
- Pockets
- 5 · 5 records with a druggable one
Structures
14 records of P12464 in the MolNFT archive: 13 experimental, 1 predicted.
| Entry | Title | Method | Chains | Ligands | Pockets |
|---|---|---|---|---|---|
| 2KRC | Solution structure of the N-terminal domain of Bacillus subtilis delta subunit of RNA polymerase | solution nmr | A | — | — |
| 2KRC | Solution structure of the N-terminal domain of bacillus subtilis delta subunit of RNA polymerase | solution nmr | A | — | — |
| 2M4K | Solution structure of the delta subunit of RNA polymerase from Bacillus subtilis | solution nmr | A | — | — |
| 2M4K | Solution structure of the delta subunit of RNA polymerase from bacillus subtilis | solution nmr | A | — | — |
| 4NC7 | N-terminal domain of delta-subunit of RNA polymerase complexed with I3C and nickel ions | x-ray diffraction | A, B | I3C, NI | 1 (best 0.69) |
| 4NC7 | N-terminal domain of delta-subunit of RNA polymerase complexed with I3C and nickel ions | x-ray diffraction | A, B | — | — |
| 4NC8 | N-terminal domain of delta-subunit of RNA polymerase complexed with nickel ions | x-ray diffraction | A, B | NI | 1 (best 0.69) |
| 4NC8 | N-terminal domain of delta-subunit of RNA polymerase complexed with nickel ions | x-ray diffraction | A, B | — | — |
| 7F75 | Cryo-EM structure of Spx-dependent transcription activation complex | electron microscopy | L | — | 1 (best 0.79) |
| 7F75 | Cryo-EM structure of spx-dependent transcription activation complex | electron microscopy | L | — | — |
| 8XA6 | Cryo-EM structure of Bacillus RNAP and SPO1 gp33 complex | electron microscopy | L | — | 1 (best 0.81) |
| 8XA7 | Cryo-EM structure of Bacillus subtilis RNAP,sigA and SPO1 gp33 complex | electron microscopy | L | — | 1 (best 0.62) |
| 8XA8 | Cryo-EM structure of Bacillus RNAP and HelD complex | electron microscopy | I | — | — |
| P12464 | AlphaFold monomer V2.0 prediction for DNA-directed RNA polymerase subunit delta (P12464) | predicted | A | — | — |
Ligands
Experiment against prediction
- 7F75 chain L against the predicted model P12464: TM-score 0.92, RMSD 1.10 Å
- 7F75 chain L against the predicted model P12464: TM-score 0.92, RMSD 1.10 Å
- 2M4K chain A against the predicted model P12464: TM-score 0.89, RMSD 1.25 Å
- 2M4K chain A against the predicted model P12464: TM-score 0.89, RMSD 1.25 Å
- 8XA8 chain I against the predicted model P12464: TM-score 0.86, RMSD 1.88 Å
- 4NC7 chain A against the predicted model P12464: TM-score 0.84, RMSD 1.55 Å
- 4NC7 chain A against the predicted model P12464: TM-score 0.84, RMSD 1.55 Å
- 4NC8 chain A against the predicted model P12464: TM-score 0.84, RMSD 1.49 Å
- 4NC8 chain A against the predicted model P12464: TM-score 0.84, RMSD 1.49 Å
- 8XA7 chain L against the predicted model P12464: TM-score 0.83, RMSD 1.72 Å
Elsewhere
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