UniProt P07753
Photosystem II protein D1 (P07753)
Photosystem II protein D1 (UniProt P07753), EC 1.10.3.9: 4 experimental structures and 1 predicted model on GenesisL1, 12 ligands bound, 27 pockets. Binding sites, druggability and experiment against prediction (TM-score) in GL1X.
- UniProt
- P07753
- Protein
- Photosystem II protein D1
- EC
- 1.10.3.9
- Experimental structures
- 4
- Predicted models
- 1
- Ligands
- 12
- Pockets
- 27 · 3 records with a druggable one
Structures
5 records of P07753 in the MolNFT archive: 4 experimental, 1 predicted.
| Entry | Title | Method | Chains | Ligands | Pockets |
|---|---|---|---|---|---|
| 6KAC | Cryo-EM structure of the C2S2-type psii-lhcii supercomplex from chlamydomonas reihardtii | electron microscopy | A, a | OEX, FE2, CL, CLA, PHO, BCR | — |
| 6KAD | Cryo-EM structure of the C2S2M2L2-type PSII-LHCII supercomplex from Chlamydomonas reihardtii | electron microscopy | A, a | OEX, FE2, CLA, PHO, BCR, SQD | — |
| 8R2I | Cryo-EM Structure of native Photosystem II assembly intermediate from Chlamydomonas reinhardtii | electron microscopy | A | FE2, CLA, PHO, BCR, DGD, BCT | 12 (best 0.80) |
| 8ZEE | Cryo-EM structure of an intermediate-state PSII-PRF2' complex during the process of photosystem II… | electron microscopy | A | BCT, CLA, PL9, LHG, PHO, DGD | 12 (best 0.84) |
| P07753 | AlphaFold monomer V2.0 prediction for photosystem II protein D1 (P07753) | predicted | A | — | 3 (best 0.67) |
Ligands
- BCR · Beta-carotene · in 4 records
- BCT · Bicarbonate ion · in 4 records
- CLA · Chlorophyll A · in 4 records
- DGD · Digalactosyl diacyl glycerol (dgdg) · in 4 records
- FE2 · Fe (II) ion · in 4 records
- PHO · Pheophytin A · in 4 records
- PL9 · 2,3-dimethyl-5-(3,7,11,15,19,23,27,31,35-nonamethyl-2, 6,10,14,18,22,26,30,34-hexatriacontanonaenyl-2,5-cyclohexadiene-1,4-dione-2,3-dimethyl-5-solanesyl-1,4-benzoquinone · in 4 records
- LHG · 1,2-dipalmitoyl-phosphatidyl-glycerole · in 3 records
- LMG · 1,2-distearoyl-monogalactosyl-diglyceride · in 3 records
- SQD · 1,2-di-O-acyl-3-O-[6-deoxy-6-sulfo-alpha-D-glucopyranosyl]-sn-glycerol · in 3 records
- OEX · Ca-MN4-O5 cluster · in 2 records
- CL · Chloride ion · in 1 record
Experiment against prediction
- 6KAC chain A against the predicted model P07753: TM-score 0.99, RMSD 0.53 Å
- 6KAD chain A against the predicted model P07753: TM-score 0.99, RMSD 0.60 Å
- 8R2I chain A against the predicted model P07753: TM-score 0.97, RMSD 1.21 Å
- 8ZEE chain A against the predicted model P07753: TM-score 0.97, RMSD 1.37 Å
Elsewhere
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