MolNFT v1 · #313577 · protein
AlphaFold monomer V2.0 prediction for photosystem II protein D1 (P07753)
P07753: “AlphaFold monomer V2.0 prediction for photosystem II protein D1 (P07753)”. 3 pockets (best druggability 0.67). MolNFT v1 #313577 on GenesisL1: 3D structure, binding sites and pockets in GL1X.
- Accession
- P07753
- Type
- protein
- Length
- 352 residues
- Chains
- 1
- Collection
- MolNFT v1 / AlphaFold
- Contract
- 0xBf7491af3407816DFa88a5EA4c82e8A2B1D721eD
- Owner
- 0xF336F3B74E376B91b0149E66DCdF03429c696250
- Molecule
- Photosystem II protein D1
- UniProt
- P07753
- Pockets
- 3 · best druggability 0.67
Structure
1 distinct chain · 59% helix, 3% strand (DSSP).
| Chain | Molecule | Type | Residues | Secondary structure | UniProt |
|---|---|---|---|---|---|
| A | Photosystem II protein D1 | protein | 352 | 59% helix, 3% strand | P07753 |
Pockets
3 pockets found on a 1 Å grid, 2 with a druggability of 0.5 or more.
| Volume (ų) | Druggability | Buriedness | Lining residues | Inside | |
|---|---|---|---|---|---|
| 1 | 469 | 0.67 | 0.79 | 61 | empty |
| 2 | 73 | 0.64 | 0.91 | 17 | empty |
| 3 | 134 | 0.44 | 0.75 | 20 | empty |
Compared structures
- 6KAC · Cryo-EM structure of the C2S2-type psii-lhcii supercomplex from chlamydomonas reihardtii · an experimental structure of the same protein · chain A against A, TM-score 0.95
- 6KAD · Cryo-EM structure of the C2S2M2L2-type PSII-LHCII supercomplex from Chlamydomonas… · an experimental structure of the same protein · chain A against A, TM-score 0.95
- 8ZEE · Cryo-EM structure of an intermediate-state PSII-PRF2' complex during the process of… · an experimental structure of the same protein · chain A against A, TM-score 0.85
- 8R2I · Cryo-EM Structure of native Photosystem II assembly intermediate from Chlamydomonas… · an experimental structure of the same protein · chain A against A, TM-score 0.85
Analyse
- Open in the research workbench: secondary structure, accessibility, pockets, interfaces, conservation, variants, modifications, peptides and crosslinks on the 3D structure
- Every structure of UniProt P07753
- Elsewhere: UniProt P07753 · AlphaFold DB P07753
GL1X is a live explorer of the GenesisL1 blockchain. Turn on JavaScript for search, charts and interactive views.