UniProt P01123
GTP-binding protein YPT1 (P01123)
GTP-binding protein YPT1 (UniProt P01123): 9 experimental structures and 1 predicted model on GenesisL1, 1 pocket. Binding sites, druggability and experiment against prediction (TM-score) in GL1X.
- UniProt
- P01123
- Protein
- GTP-binding protein YPT1
- Experimental structures
- 9
- Predicted models
- 1
- Pockets
- 1 · 1 record with a druggable one
Structures
10 records of P01123 in the MolNFT archive: 9 experimental, 1 predicted.
| Entry | Title | Method | Chains | Ligands | Pockets |
|---|---|---|---|---|---|
| 1UKV | Structure of RabGDP-dissociation inhibitor in complex with prenylated YPT1 GTPase | x-ray diffraction | Y | — | — |
| 1UKV | Structure of rabgdp-dissociation inhibitor in complex with prenylated YPT1 GTPase | x-ray diffraction | Y | — | — |
| 1YZN | GppNHp-Bound Ypt1p GTPase | x-ray diffraction | A | — | — |
| 1YZN | Gppnhp-bound YPT1P GTPase | x-ray diffraction | A | — | — |
| 2BCG | Structure of doubly prenylated Ypt1:GDI complex | x-ray diffraction | Y | — | — |
| 2BCG | Structure of doubly prenylated YPT1:GDI complex | x-ray diffraction | Y | — | — |
| 3CUE | Crystal structure of a TRAPP subassembly activating the Rab Ypt1p | x-ray diffraction | F, L, R, X | — | — |
| 3CUE | Crystal structure of a trapp subassembly activating the rab YPT1P | x-ray diffraction | F, L, R, X | — | — |
| 7KMT | Structure of the yeast trappiii-YPT1(RAB1) complex | electron microscopy | A | — | — |
| P01123 | AlphaFold monomer V2.0 prediction for GTP-binding protein YPT1 (P01123) | predicted | A | — | 1 (best 0.55) |
Experiment against prediction
- 1YZN chain A against the predicted model P01123: TM-score 0.92, RMSD 1.56 Å
- 1YZN chain A against the predicted model P01123: TM-score 0.92, RMSD 1.56 Å
- 3CUE chain F against the predicted model P01123: TM-score 0.87, RMSD 2.14 Å
- 3CUE chain F against the predicted model P01123: TM-score 0.87, RMSD 2.14 Å
- 2BCG chain Y against the predicted model P01123: TM-score 0.84, RMSD 2.08 Å
- 2BCG chain Y against the predicted model P01123: TM-score 0.84, RMSD 2.08 Å
- 1UKV chain Y against the predicted model P01123: TM-score 0.83, RMSD 2.07 Å
- 1UKV chain Y against the predicted model P01123: TM-score 0.83, RMSD 2.07 Å
- 7KMT chain A against the predicted model P01123: TM-score 0.81, RMSD 2.22 Å
Elsewhere
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