UniProt O60760
Hematopoietic prostaglandin D synthase (O60760)
Hematopoietic prostaglandin D synthase (UniProt O60760), EC 2.5.1.18, 5.3.99.2: 52 experimental structures and 1 predicted model on GenesisL1, 12 ligands bound, 5 pockets. Binding sites, druggability and experiment against…
- UniProt
- O60760
- Protein
- Hematopoietic prostaglandin D synthase
- EC
- 2.5.1.18, 5.3.99.2
- Experimental structures
- 52
- Predicted models
- 1
- Ligands
- 12
- Pockets
- 5 · 1 record with a druggable one
Structures
53 records of O60760 in the MolNFT archive: 52 experimental, 1 predicted.
| Entry | Title | Method | Chains | Ligands | Pockets |
|---|---|---|---|---|---|
| 1IYH | Crystal structure of hematopoietic prostaglandin D synthase | x-ray diffraction | A, B, C, D | — | — |
| 1IYH | Crystal structure of hematopoietic prostaglandin D synthase | x-ray diffraction | A, B, C, D | — | — |
| 1IYI | Crystal structure of hematopoietic prostaglandin D synthase | x-ray diffraction | A, B, C, D | — | — |
| 1IYI | Crystal structure of hematopoietic prostaglandin D synthase | x-ray diffraction | A, B, C, D | — | — |
| 1V40 | First Inhibitor Complex Structure of Human Hematopoietic Prostaglandin D Synthase | x-ray diffraction | A, B, C, D | — | — |
| 1V40 | First inhibitor complex structure of human hematopoietic prostaglandin D synthase | x-ray diffraction | A, B, C, D | — | — |
| 2CVD | Crystal structure analysis of human hematopoietic prostaglandin D synthase complexed with HQL-79 | x-ray diffraction | A, B, C, D | — | — |
| 2CVD | Crystal structure analysis of human hematopoietic prostaglandin D synthase complexed with hql-79 | x-ray diffraction | A, B, C, D | — | — |
| 2VCQ | Complex structure of prostaglandin D2 synthase at 1.95A. | x-ray diffraction | A, B, C, D | — | — |
| 2VCQ | Complex structure of prostaglandin D2 synthase at 1.95A. | x-ray diffraction | A, B, C, D | — | — |
| 2VCW | Complex structure of prostaglandin D2 synthase at 1.95A. | x-ray diffraction | A, B, C, D | — | — |
| 2VCW | Complex structure of prostaglandin D2 synthase at 1.95A. | x-ray diffraction | A, B, C, D | — | — |
| 2VCX | Complex structure of prostaglandin D2 synthase at 2.1A. | x-ray diffraction | A, B, C, D | — | — |
| 2VCX | Complex structure of prostaglandin D2 synthase at 2.1A. | x-ray diffraction | A, B, C, D | — | — |
| 2VCZ | Complex structure of prostaglandin D2 synthase at 1.95A. | x-ray diffraction | A, B, C, D | — | — |
| 2VCZ | Complex structure of prostaglandin D2 synthase at 1.95A. | x-ray diffraction | A, B, C, D | — | — |
| 2VD0 | Complex structure of prostaglandin D2 synthase at 2.2A. | x-ray diffraction | A, B, C, D | — | — |
| 2VD0 | Complex structure of prostaglandin D2 synthase at 2.2A. | x-ray diffraction | A, B, C, D | — | — |
| 2VD1 | Complex structure of prostaglandin D2 synthase at 2.25A. | x-ray diffraction | A, B, C, D | — | — |
| 2VD1 | Complex structure of prostaglandin D2 synthase at 2.25A. | x-ray diffraction | A, B, C, D | — | — |
| 3EE2 | Structure of human prostaglandin D-synthase (hGSTS1-1) in complex with nocodazole | x-ray diffraction | A, B | — | — |
| 3EE2 | Structure of human prostaglandin D-synthase (HGSTS1-1) in complex with nocodazole | x-ray diffraction | A, B | — | — |
| 3KXO | An orally active inhibitor bound at the active site of HPGDS | x-ray diffraction | A, B | — | — |
| 3KXO | An orally active inhibitor bound at the active site of hpgds | x-ray diffraction | A, B | — | — |
| 3VI5 | Human hematopoietic prostaglandin D synthase inhibitor complex structures | x-ray diffraction | A, B, C, D | — | — |
| 3VI5 | Human hematopoietic prostaglandin D synthase inhibitor complex structures | x-ray diffraction | A, B, C, D | — | — |
| 3VI7 | Human hematopoietic prostaglandin D synthase inhibitor complex structures | x-ray diffraction | A, B, C, D | — | — |
| 3VI7 | Human hematopoietic prostaglandin D synthase inhibitor complex structures | x-ray diffraction | A, B, C, D | — | — |
| 4EC0 | Crystal structure of hH-PGDS with water displacing inhibitor | x-ray diffraction | A, B | — | — |
| 4EC0 | Crystal structure of hh-pgds with water displacing inhibitor | x-ray diffraction | A, B | — | — |
| 4EDY | Crystal structure of hH-PGDS with water displacing inhibitor | x-ray diffraction | A, B | — | — |
| 4EDY | Crystal structure of hh-pgds with water displacing inhibitor | x-ray diffraction | A, B | — | — |
| 4EDZ | Crystal structure of hH-PGDS with water displacing inhibitor | x-ray diffraction | A, B, C, D | — | — |
| 4EDZ | Crystal structure of hh-pgds with water displacing inhibitor | x-ray diffraction | A, B, C, D | — | — |
| 4EE0 | Crystal structure of hH-PGDS with water displacing inhibitor | x-ray diffraction | A, B | — | — |
| 4EE0 | Crystal structure of hh-pgds with water displacing inhibitor | x-ray diffraction | A, B | — | — |
| 5AIS | Complex of human hematopoietic prostagandin D2 synthase (hH-PGDS) in complex with an active site… | x-ray diffraction | A, B, C, D | — | — |
| 5AIS | Complex of human hematopoietic prostagandin D2 synthase (hh- pgds) in complex with an active site… | x-ray diffraction | A, B, C, D | — | — |
| 5AIV | Complex of human hematopoietic prostagandin D2 synthase (hH-PGDS) in complex with an active site… | x-ray diffraction | A, B, C, D | — | — |
| 5AIV | Complex of human hematopoietic prostagandin D2 synthase (hh- pgds) in complex with an active site… | x-ray diffraction | A, B, C, D | — | — |
| 5AIX | Complex of human hematopoietic prostagandin D2 synthase (hH-PGDS) in complex with an active site… | x-ray diffraction | A, B, C, D | — | — |
| 5AIX | Complex of human hematopoietic prostagandin D2 synthase (hh- pgds) in complex with an active site… | x-ray diffraction | A, B, C, D | — | — |
| 5YWE | Crystal structure of hematopoietic prostaglandin D synthase apo form | x-ray diffraction | A, B, C, D | GSH, MG | 5 (best 0.79) |
| 5YWE | Crystal structure of hematopoietic prostaglandin D synthase apo form | x-ray diffraction | A, B, C, D | GSH, MG | — |
| 5YWX | Crystal structure of hematopoietic prostaglandin D synthase in complex with F092 | x-ray diffraction | A, B, C, D | GSH, 93C, MG | — |
| 5YX1 | Crystal structure of hematopoietic prostaglandin D synthase in complex with U004 | x-ray diffraction | A, B, C, D | MG, GSH, UX4 | — |
| 6N4E | Hpgds complexed with a quinoline-3-carboxamide | x-ray diffraction | A | GSH, KCD | — |
| 6W58 | Hpgds complexed with an aza-quinoline | x-ray diffraction | A, B | GSH, SWS | — |
| 6W8H | H-pgds complexed with inhibitor 1Y | x-ray diffraction | A, C | GSH, TJG | — |
| 6ZTC | Crystal structure of prostaglandin D2 synthase in complex with fragment 1A at 1.84A resolution. | x-ray diffraction | A, B | GSH, MG, QPN | — |
| 7JR6 | H-pdgs complexed with a 2-PHENYLIMIDAZO[1,2-A]PYRIDINE-6-carboxamide inhibitors | x-ray diffraction | A, B | GSH, VH4, MG, NA | — |
| 7JR8 | H-pdgs complexed with a 2-PHENYLIMIDAZO[1,2-A]PYRIDINE-6-carboxamide inhibitors | x-ray diffraction | A, B | CL, GSH, VH7, MG, NA | — |
| O60760 | AlphaFold monomer V2.0 prediction for hematopoietic prostaglandin D synthase (O60760) | predicted | A | — | — |
Ligands
- GSH · Glutathione · in 10 records
- MG · Magnesium ion · in 7 records
- NA · Sodium ion · in 2 records
- 93C · N-[4-(2-oxopyrrolidin-1-yl)phenyl]-2-(pyridin-2-yl) pyrimidine-5-carboxamide · in 1 record
- CL · Chloride ion · in 1 record
- KCD · 7-(difluoromethoxy)-N-[trans-4-(2-hydroxypropan-2-yl) cyclohexyl]quinoline-3-carboxamide · in 1 record
- QPN · 1-[1-(3-fluorophenyl)-6,7-dihydro-4~{H}-pyrazolo[4,3-c]pyridin-5-yl]propan-1-one · in 1 record
- SWS · 7-(azetidin-1-yl)-~{N}-[4-(2-oxidanylpropan-2-yl) cyclohexyl]-1,6-naphthyridine-3-carboxamide · in 1 record
- TJG · 7-cyclopropyl-N-[trans-4-(2-hydroxypropan-2-yl) cyclohexyl]-1,8-naphthyridine-3-carboxamide · in 1 record
- UX4 · Ethyl 4-[(8R)-3,8-dimethyl-4-oxo-4,6,7,8,9,10-hexahydrothieno[2',3':4,5]pyrimido[1,2-a]azepin-2-yl]carbamoylpiperazine-1-carboxylate · in 1 record
- VH4 · 1-(3-fluorophenyl)-N-[trans-4-(2-hydroxypropan-2-yl) cyclohexyl]-1,4,6,7-tetrahydro-5H-pyrazolo[4,3-c]pyridine-5-carboxamide · in 1 record
- VH7 · N-[trans-4-(2-hydroxypropan-2-yl)cyclohexyl]-2-phenylimidazo[1,2-a]pyridine-6-carboxamide · in 1 record
Experiment against prediction
- 5AIV chain A against the predicted model O60760: TM-score 0.99, RMSD 0.42 Å
- 5AIV chain A against the predicted model O60760: TM-score 0.99, RMSD 0.42 Å
- 5AIS chain A against the predicted model O60760: TM-score 0.99, RMSD 0.42 Å
- 5AIS chain A against the predicted model O60760: TM-score 0.99, RMSD 0.42 Å
- 6W8H chain A against the predicted model O60760: TM-score 0.99, RMSD 0.43 Å
- 7JR6 chain A against the predicted model O60760: TM-score 0.99, RMSD 0.45 Å
- 2VCX chain A against the predicted model O60760: TM-score 0.99, RMSD 0.45 Å
- 2VCX chain A against the predicted model O60760: TM-score 0.99, RMSD 0.45 Å
- 6N4E chain A against the predicted model O60760: TM-score 0.99, RMSD 0.46 Å
- 2VD1 chain A against the predicted model O60760: TM-score 0.99, RMSD 0.45 Å
Elsewhere
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