MolNFT v1 · #178963 · protein
H-pdgs complexed with a 2-PHENYLIMIDAZO[1,2-A]PYRIDINE-6-carboxamide inhibitors
7JR6: “H-pdgs complexed with a 2-PHENYLIMIDAZO[1,2-A]PYRIDINE-6-carboxamide inhibitors”. X-ray diffraction, 4 ligands (GSH, VH4, MG). MolNFT v1 #178963 on GenesisL1: 3D structure, binding sites and pockets in GL1X.
- PDB
- 7JR6
- Type
- protein
- Length
- 400 residues
- Chains
- 2
- Method
- x-ray diffraction
- Collection
- MolNFT v1 / PDB
- Contract
- 0xDE3723766Bc32dcACD03C17BaA400A7B36837Eba
- Owner
- 0x3396CDB397284571d12822B4ae1189a8E22AAAAA
- UniProt
- O60760
- Ligands
- GSH, VH4, MG, NA
Structure
x-ray diffraction · 1 distinct chain.
| Chain | Molecule | Type | Residues | Secondary structure | UniProt |
|---|---|---|---|---|---|
| A, B | — | protein | 200 | — | O60760 |
Ligands and binding sites
- GSH · Glutathione · ligand · 2 copies · chains A, B
- VH4 · 1-(3-fluorophenyl)-N-[trans-4-(2-hydroxypropan-2-yl) cyclohexyl]-1,4,6,7-tetrahydro-5H-pyrazolo[4,3-c]pyridine-5-carboxamide · ligand · 2 copies · chains A, B
- MG · Magnesium ion · metal · 2 copies · chains A, B
- NA · Sodium ion · metal · 2 copies · chains A
Binding sites are the residues within 4.5 Å of a ligand's heavy atoms.
Compared structures
- 7JR6 · H-PDGS complexed with a 2-phenylimidazo[1,2-a]pyridine-6-carboxamide inhibitors · the same entry in another collection · chain A against A, TM-score 1.00
- O60760 · AlphaFold monomer V2.0 prediction for hematopoietic prostaglandin D synthase (O60760) · a predicted model of the same protein · chain A against A, TM-score 0.99
Analyse
- Open in the research workbench: secondary structure, accessibility, pockets, interfaces, conservation, variants, modifications, peptides and crosslinks on the 3D structure
- Every structure of UniProt O60760
- Elsewhere: RCSB PDB 7JR6 · PDBe 7JR6 · UniProt O60760
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