MolNFT v1 · #172156 · protein
Crystal structure of prostaglandin D2 synthase in complex with fragment 1A at 1.84A resolution.
6ZTC: “Crystal structure of prostaglandin D2 synthase in complex with fragment 1A at 1.84A resolution.”. X-ray diffraction, 3 ligands (GSH, QPN, MG). MolNFT v1 #172156 on GenesisL1: 3D structure, binding sites and pockets in GL1X.
- PDB
- 6ZTC
- Type
- protein
- Length
- 399 residues
- Chains
- 2
- Method
- x-ray diffraction
- Collection
- MolNFT v1 / PDB
- Contract
- 0xDE3723766Bc32dcACD03C17BaA400A7B36837Eba
- Owner
- 0x3396CDB397284571d12822B4ae1189a8E22AAAAA
- UniProt
- O60760
- Ligands
- GSH, QPN, MG
Structure
x-ray diffraction · 2 distinct chains.
| Chain | Molecule | Type | Residues | Secondary structure | UniProt |
|---|---|---|---|---|---|
| A | — | protein | 199 | — | O60760 |
| B | — | protein | 200 | — | O60760 |
Ligands and binding sites
- GSH · Glutathione · ligand · 2 copies · chains A, B
- QPN · 1-[1-(3-fluorophenyl)-6,7-dihydro-4~{H}-pyrazolo[4,3-c]pyridin-5-yl]propan-1-one · ligand · 2 copies · chains A, B
- MG · Magnesium ion · metal · chains A, B
- GOL · Glycerol · additive · 3 copies · chains A, B
Binding sites are the residues within 4.5 Å of a ligand's heavy atoms.
Compared structures
- 6ZTC · Crystal structure of prostaglandin D2 synthase in complex with fragment 1A at 1.84A… · the same entry in another collection · chain A against A, TM-score 1.00
- O60760 · AlphaFold monomer V2.0 prediction for hematopoietic prostaglandin D synthase (O60760) · a predicted model of the same protein · chain A against A, TM-score 0.99
Analyse
- Open in the research workbench: secondary structure, accessibility, pockets, interfaces, conservation, variants, modifications, peptides and crosslinks on the 3D structure
- Every structure of UniProt O60760
- Elsewhere: RCSB PDB 6ZTC · PDBe 6ZTC · UniProt O60760
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