UniProt D9N168
DNA polymerase I (D9N168)
DNA polymerase I (UniProt D9N168), EC 2.7.7.7: 36 experimental structures on GenesisL1, 10 ligands bound, 272 pockets. Binding sites, pockets, druggability and 3D structures in GL1X.
- UniProt
- D9N168
- Protein
- DNA polymerase I
- EC
- 2.7.7.7
- Experimental structures
- 36
- Predicted models
- 0
- Ligands
- 10
- Pockets
- 272 · 18 records with a druggable one
Structures
36 records of D9N168 in the MolNFT archive: 36 experimental, 0 predicted.
| Entry | Title | Method | Chains | Ligands | Pockets |
|---|---|---|---|---|---|
| 4DSI | Crystal structure of fragment DNA polymerase I from Bacillus stearothermophilus with duplex DNA… | x-ray diffraction | A | — | — |
| 4DSI | Crystal structure of fragment DNA polymerase I from bacillus stearothermophilus with duplex DNA… | x-ray diffraction | A | — | — |
| 4DSJ | Crystal structure of fragment DNA polymerase I from Bacillus stearothermophilus with duplex DNA… | x-ray diffraction | A, B | — | — |
| 4DSJ | Crystal structure of fragment DNA polymerase I from bacillus stearothermophilus with duplex DNA… | x-ray diffraction | A, B | — | — |
| 4DSK | Crystal structure of fragment DNA polymerase I from Bacillus stearothermophilus with duplex DNA… | x-ray diffraction | A | — | — |
| 4DSK | Crystal structure of fragment DNA polymerase I from bacillus stearothermophilus with duplex DNA… | x-ray diffraction | A | — | — |
| 4DSL | Crystal structure of fragment DNA polymerase I from Bacillus stearothermophilus with duplex DNA and… | x-ray diffraction | A | — | — |
| 4DSL | Crystal structure of fragment DNA polymerase I from bacillus stearothermophilus with duplex DNA and… | x-ray diffraction | A | — | — |
| 4DWI | Crystal structure of fragment DNA polymerase I from Bacillus stearothermophilus with self… | x-ray diffraction | A | — | — |
| 4DWI | Crystal structure of fragment DNA polymerase I from bacillus stearothermophilus with self… | x-ray diffraction | A | — | — |
| 4O0I | Crystal structure of fragment DNA polymerase I from Bacillus stearothermophilus with… | x-ray diffraction | A | — | — |
| 4O0I | Crystal structure of fragment DNA polymerase I from bacillus stearothermophilus with… | x-ray diffraction | A | — | — |
| 6P5C | Bacillus Fragment DNA polymerase mutant I716M | x-ray diffraction | A | SO4 | 12 (best 0.73) |
| 6P5C | Bacillus fragment DNA polymerase mutant I716M | x-ray diffraction | A | SO4 | — |
| 6UEU | Crystal structure of BF DNA polymerase F710Y mutant bound to tetrahydrofuran and dATP | x-ray diffraction | A, D | GLC, FRU, DTP, SO4 | 17 (best 0.77) |
| 6UEU | Crystal structure of bf DNA polymerase F710Y mutant bound to tetrahydrofuran and datp | x-ray diffraction | A, D | GLC, FRU, DTP, SO4 | — |
| 6UR2 | DNA polymerase I Large Fragment from Bacillus stearothermophilus with DNA template and primer… | x-ray diffraction | A | — | 7 (best 0.71) |
| 6UR2 | DNA polymerase I large fragment from bacillus stearothermophilus with DNA template and primer… | x-ray diffraction | A | — | — |
| 6UR4 | DNA polymerase I Large Fragment from Bacillus stearothermophilus with DNA template and 3'-amino… | x-ray diffraction | A | — | 8 (best 0.70) |
| 6UR4 | DNA polymerase I large fragment from bacillus stearothermophilus with DNA template and 3'-amino… | x-ray diffraction | A | — | — |
| 6UR9 | DNA polymerase I Large Fragment from Bacillus stearothermophilus with DNA template, dideoxy primer… | x-ray diffraction | A, D | NG3, CA, SO4 | 16 (best 0.77) |
| 6UR9 | DNA polymerase I large fragment from bacillus stearothermophilus with DNA template, dideoxy primer… | x-ray diffraction | A, D | NG3, CA, SO4 | — |
| 6US5 | DNA polymerase I Large Fragment from Bacillus stearothermophilus with DNA template, 3'-amino… | x-ray diffraction | A, D | XG4, MN, SO4 | 12 (best 0.79) |
| 6US5 | DNA polymerase I large fragment from bacillus stearothermophilus with DNA template, 3'-amino… | x-ray diffraction | A, D | XG4, MN, SO4 | — |
| 8SCG | Bst DNA polymerase I Large Fragment mutant F710Y/D598A with 3'-amino primer, dGTP, and calcium… | x-ray diffraction | A, D | DGT, CA, SO4 | 18 (best 0.78) |
| 8SCI | Bst DNA polymerase I Large Fragment mutant F710Y/D598A with 3'-amino primer, dGTP, and calcium… | x-ray diffraction | A, D | DPO, DGT, CA, SO4 | 16 (best 0.77) |
| 8SCJ | Bst DNA polymerase I Large Fragment mutant F710Y/D598A with 3'-amino primer, dGTP, and calcium… | x-ray diffraction | A, D | DPO, DGT, CA, SO4 | 14 (best 0.78) |
| 8SCL | Bst DNA polymerase I Large Fragment mutant F710Y/D598A with 3'-amino primer, dGTP, and calcium… | x-ray diffraction | A, D | DPO, DGT, CA, SO4 | 16 (best 0.78) |
| 8SCM | Bst DNA polymerase I Large Fragment mutant F710Y/D598A with 3'-amino primer, dGTP, and calcium… | x-ray diffraction | A, D | DPO, DGT, CA, SO4 | 18 (best 0.79) |
| 8SCN | Bst DNA polymerase I Large Fragment mutant F710Y/D598A with 3'-amino primer, dGTP, and calcium… | x-ray diffraction | A, D | DPO, CA, SO4 | 16 (best 0.77) |
| 8SCO | Bst DNA polymerase I Large Fragment wildtype D598A with 3'-amino primer, dGTP, and calcium… | x-ray diffraction | A, D | DGT, CA, SO4 | 17 (best 0.80) |
| 8SCP | Bst DNA polymerase I Large Fragment wildtype D598A with 3'-amino primer, dGTP, and calcium… | x-ray diffraction | A, D | DPO, DGT, CA, SO4 | 17 (best 0.78) |
| 8SCQ | Bst DNA polymerase I Large Fragment wildtype D598A with 3'-amino primer, dGTP, and calcium… | x-ray diffraction | A, D | DPO, DGT, CA, SO4 | 17 (best 0.78) |
| 8SCS | Bst DNA polymerase I Large Fragment wildtype D598A with 3'-amino primer, dGTP, and calcium… | x-ray diffraction | A, D | DPO, DGT, CA, SO4 | 18 (best 0.79) |
| 8SCT | Bst DNA polymerase I Large Fragment wildtype D598A with 3'-amino primer, dGTP, and calcium… | x-ray diffraction | A, D | DPO, DGT, CA, SO4 | 16 (best 0.78) |
| 8SCU | Bst DNA polymerase I Large Fragment wildtype D598A with 3'-amino primer, dGTP, and calcium… | x-ray diffraction | A, D | DPO, CA, SO4, DGT | 17 (best 0.77) |
Ligands
- SO4 · Sulfate ion · in 20 records
- CA · Calcium ion · in 14 records
- DGT · 2'-deoxyguanosine-5'-triphosphate · in 11 records
- DPO · Diphosphate · in 10 records
- DTP · 2'-deoxyadenosine 5'-triphosphate · in 2 records
- FRU · beta-D-fructofuranose · in 2 records
- GLC · alpha-D-glucopyranose · in 2 records
- MN · Manganese (II) ion · in 2 records
- NG3 · 3'-amino-2',3'-dideoxyguanosine 5'-(tetrahydrogen triphosphate) · in 2 records
- XG4 · 2'-deoxy-5'-O-[(R)-hydroxy{[(R)-hydroxy(phosphonooxy)phosphoryl]amino}phosphoryl]guanosine · in 2 records
Elsewhere
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