MolNFT v1 · #166512 · protein + DNA
DNA polymerase I large fragment from bacillus stearothermophilus with DNA template, 3'-amino primer, dgpnhpp analog, and MN2+
6US5: “DNA polymerase I large fragment from bacillus stearothermophilus with DNA template, 3'-amino primer, dgpnhpp…”. X-ray diffraction, 3 ligands (XG4, MN, SO4). MolNFT v1 #166512 on GenesisL1: 3D structure, binding sites and pockets in…
- PDB
- 6US5
- Type
- protein + DNA
- Length
- 1,199 residues
- Chains
- 6
- Method
- x-ray diffraction
- Collection
- MolNFT v1 / PDB
- Contract
- 0xDE3723766Bc32dcACD03C17BaA400A7B36837Eba
- Owner
- 0x3396CDB397284571d12822B4ae1189a8E22AAAAA
- UniProt
- D9N168
- Ligands
- XG4, MN, SO4
Structure
x-ray diffraction · 4 distinct chains.
| Chain | Molecule | Type | Residues | Secondary structure | UniProt |
|---|---|---|---|---|---|
| A, D | — | protein | 579 | — | D9N168 |
| B, E | — | dna | 9 | — | — |
| C | — | dna | 12 | — | — |
| F | — | dna | 11 | — | — |
Ligands and binding sites
- XG4 · 2'-deoxy-5'-O-[(R)-hydroxy{[(R)-hydroxy(phosphonooxy)phosphoryl]amino}phosphoryl]guanosine · ligand · 2 copies · chains A, B, C, D, E, F
- MN · Manganese (II) ion · metal · 2 copies · chains A, D
- SO4 · Sulfate ion · ion · 7 copies · chains A, D, B, C
Binding sites are the residues within 4.5 Å of a ligand's heavy atoms.
Compared structures
- 6US5 · DNA polymerase I Large Fragment from Bacillus stearothermophilus with DNA template… · the same entry in another collection · chain A against A, TM-score 1.00
Analyse
- Open in the research workbench: secondary structure, accessibility, pockets, interfaces, conservation, variants, modifications, peptides and crosslinks on the 3D structure
- Every structure of UniProt D9N168
- Elsewhere: RCSB PDB 6US5 · PDBe 6US5 · UniProt D9N168
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