Ligand · Z9H
Z9H · 3,4-di-O-methyl-2,6-di-O-sulfo-alpha-D-glucopyranose
Z9H, 3,4-di-O-methyl-2,6-di-O-sulfo-alpha-D-glucopyranose (C8 H16 O12 S2, 368.3 g/mol), in the MolNFT structures on GenesisL1: bound in 8 records (4 PDB entries). Every binding site with its residues within 4.5 Å, the residues it binds…
- Component
- Z9H
- Formula
- C8 H16 O12 S2
- Class
- sugar
- Structures
- 8
- PDB entries
- 4
Binding sites
Z9H in 8 structures; the first of them:
- 1AZX · ANTITHROMBIN/PENTASACCHARIDE complex · Z9H A5 · binds ALA43, THR44, ASN45, VAL48, LYS125, ARG129
- 1E03 · Plasma alpha antithrombin-III and pentasaccharide · Z9H E5 · binds ALA43, THR44, ASN45, VAL48, ARG129
- 1NQ9 · Crystal Structure of Antithrombin in the Pentasaccharide-Bound Intermediate State · Z9H D5 · binds ALA43, THR44, ASN45, VAL48, LYS125, ARG129
- 3KCG · Crystal structure of the antithrombin-factor IXa-pentasaccharide complex · Z9H D5 · binds ALA43, THR44, ASN45, VAL48, LYS125, ARG129
- 1AZX · ANTITHROMBIN/PENTASACCHARIDE complex · Z9H A5 · binds ALA43, THR44, ASN45, VAL48, LYS125, ARG129
- 1E03 · Plasma alpha antithrombin-III and pentasaccharide · Z9H E5 · binds ALA43, THR44, ASN45, VAL48, ARG129
- 1NQ9 · Crystal structure of antithrombin in the pentasaccharide-bound intermediate state · Z9H D5 · binds ALA43, THR44, ASN45, VAL48, LYS125, ARG129
- 3KCG · Crystal structure of the antithrombin-factor ixa-pentasaccharide complex · Z9H D5 · binds ALA43, THR44, ASN45, VAL48, LYS125, ARG129
Residues it binds most
ALA 14, ARG 14, ASN 14, THR 14, VAL 14, LYS 12, GLU 2 (residue and the binding sites it lines).
Found with
- Z9K · 3-O-methyl-2-O-sulfo-alpha-L-idopyranuronic acid
- Z9L · methyl 2,3,6-tri-O-sulfo-alpha-D-glucopyranoside
- GU1 · 2,3-di-O-methyl-beta-D-glucopyranuronic acid
- GU6 · 2,3,6-tri-O-sulfo-alpha-D-glucopyranose
- NAG · 2-acetamido-2-deoxy-beta-D-glucopyranose
- CA · Calcium ion
- BMA · beta-D-mannopyranose
- FUC · alpha-L-fucopyranose
- MAN · alpha-D-mannopyranose
- MPD · (4S)-2-methyl-2,4-pentanediol
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