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Ligand · Y5M

Y5M · 7-methoxy-4-(2-methyl-6,7-dihydro-5H-cyclopenta[d]pyrimidin-4-yl)-3,4-dihydroquinoxalin-2(1H)-one

Y5M, 7-methoxy-4-(2-methyl-6,7-dihydro-5H-cyclopenta[d]pyrimidin-4-yl)-3,4-dihydroquinoxalin-2(1H)-one (C17 H18 N4 O2, 310.4 g/mol), in the MolNFT structures on GenesisL1: bound in 2 records (1 PDB entry). Every binding site with its…

Component
Y5M
Formula
C17 H18 N4 O2
Class
ligand
Structures
2
PDB entries
1

Binding sites

Y5M in 2 structures; the first of them:

  • 6X1F · Tubulin-RB3_SLD-TTL in complex with compound 5m · Y5M B505 · binds ASN101, THR179, VAL181, VAL236, CYS239, LEU240, LEU246, ALA248 and 13 more
  • 6X1F · Tubulin-RB3_SLD-ttl in complex with compound 5M · Y5M B505 · binds THR179, CYS239, LEU240, LEU246, ALA248, LYS252, LEU253, ASN256 and 9 more

Residues it binds most

ALA 4, ASN 4, LEU 4, THR 4, LYS 4, VAL 3, CYS 4, ILE 4, MET 4 (residue and the binding sites it lines).

Found with

  • ACP · Phosphomethylphosphonic acid adenylate ester
  • GDP · Guanosine-5'-diphosphate
  • GTP · Guanosine-5'-triphosphate
  • CA · Calcium ion
  • MG · Magnesium ion
  • MES · 2-(N-morpholino)-ethanesulfonic acid

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