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Ligand · XXX

XXX · (1R,2R,3S,4R,6S)-4,6-diamino-2,3-dihydroxycyclohexyl 2, 6-diamino-2,6-dideoxy-alpha-D-glucopyranoside

XXX, (1R,2R,3S,4R,6S)-4,6-diamino-2,3-dihydroxycyclohexyl 2, 6-diamino-2,6-dideoxy-alpha-D-glucopyranoside (C12 H26 N4 O6, 322.4 g/mol), in the MolNFT structures on GenesisL1: bound in 4 records (3 PDB entries). Every binding site with its…

Component
XXX
Formula
C12 H26 N4 O6
Class
ligand
Structures
4
PDB entries
3

Binding sites

XXX in 4 structures; the first of them:

  • 6S0V · The crystal structure of kanamycin B dioxygenase (KanJ) from Streptomyces kanamyceticus… · XXX A305 · binds ASN73, SER118, ASN120, ASP134, GLU135, CYS150, ALA234, MET235 and 1 more
  • 5Z8K · Crystal structure of an aminotransferase in complex with product-1 · XXX A502 · binds THR16, ARG51, TYR132, LYS209, LYS232, PHE342, ASP345, ASN346 and 5 more
  • 6E0D · X-ray structure of a complex of thaumatin with xylene cyanol · XXX A502 · binds ARG79, GLY81, ARG82, PRO83, LYS106
  • 6S0V · The crystal structure of kanamycin B dioxygenase (kanj) from streptomyces kanamyceticus… · XXX A305 · binds ASN73, SER118, ASN120, ASP134, CYS150, ALA234, THR236

Residues it binds most

ASN 14, ASP 14, THR 14, MET 10, ALA 14, CYS 12, TYR 12, GLU 11, ARG 9, VAL 8 (residue and the binding sites it lines).

Found with

  • NI · Nickel (II) ion
  • SO4 · Sulfate ion
  • PLP · Pyridoxal-5'-phosphate
  • TLA · L(+)-tartaric acid

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