Ligand · XDY

XDY · N-[(1S,2S)-2-aminocyclopentyl]-N-[(5-methyl-2,4-dioxo-3,4-dihydropyrimidin-1(2H)-yl)acetyl]glycine

XDY, N-[(1S,2S)-2-aminocyclopentyl]-N-[(5-methyl-2,4-dioxo-3,4-dihydropyrimidin-1(2H)-yl)acetyl]glycine (C14 H20 N4 O5, 324.3 g/mol), in the MolNFT structures on GenesisL1: bound in 1 record (1 PDB entry). Every binding site with its…

Component: XDY
Formula: C14 H20 N4 O5
Class: ligand
Structures: 1
PDB entries: 1

Binding sites

XDY in 1 structure; the first of them:

7KZL · Cyclopentane peptide nucleic acid in complex with DNA · XDY B3 · binds DA7, DT8

Residues it binds most

DA 3, DT 2, DC 1 (residue and the binding sites it lines).

Found with

XDD · N-[(1S,2S)-2-aminocyclopentyl]-N-[(6-amino-9H-purin-9-yl)acetyl]glycine
XDJ · N-[(1S,2S)-2-aminocyclopentyl]-N-[(2-amino-6-oxo-1,6-dihydro-9H-purin-9-yl)acetyl]glycine
XDV · 2-[2-(2-aminoethoxy)ethoxy]acetamide
ZN · Zinc ion
IOD · Iodide ion
EDO · 1,2-ethanediol
MOH · Methanol

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