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Ligand · XDD

XDD · N-[(1S,2S)-2-aminocyclopentyl]-N-[(6-amino-9H-purin-9-yl)acetyl]glycine

XDD, N-[(1S,2S)-2-aminocyclopentyl]-N-[(6-amino-9H-purin-9-yl)acetyl]glycine (C14 H19 N7 O3, 333.4 g/mol), in the MolNFT structures on GenesisL1: bound in 1 record (1 PDB entry). Every binding site with its residues within 4.5 Å, the…

Component
XDD
Formula
C14 H19 N7 O3
Class
ligand
Structures
1
PDB entries
1

Binding sites

XDD in 1 structure; the first of them:

  • 7KZL · Cyclopentane peptide nucleic acid in complex with DNA · XDD B2 · binds DA7, DT8, DC9

Residues it binds most

DT 3, DA 2, DC 2 (residue and the binding sites it lines).

Found with

  • XDJ · N-[(1S,2S)-2-aminocyclopentyl]-N-[(2-amino-6-oxo-1,6-dihydro-9H-purin-9-yl)acetyl]glycine
  • XDV · 2-[2-(2-aminoethoxy)ethoxy]acetamide
  • XDY · N-[(1S,2S)-2-aminocyclopentyl]-N-[(5-methyl-2,4-dioxo-3,4-dihydropyrimidin-1(2H)-yl)acetyl]glycine
  • ZN · Zinc ion
  • IOD · Iodide ion
  • EDO · 1,2-ethanediol
  • MOH · Methanol

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