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Ligand · X6X

X6X · 2-amino-2-deoxy-alpha-D-galactopyranose

X6X, 2-amino-2-deoxy-alpha-D-galactopyranose (C6 H13 N O5, 179.2 g/mol), in the MolNFT structures on GenesisL1: bound in 5 records (4 PDB entries). Every binding site with its residues within 4.5 Å, the residues it binds most and the…

Component
X6X
Formula
C6 H13 N O5
Class
ligand
Structures
5
PDB entries
4

Binding sites

X6X in 5 structures; the first of them:

  • 5F8Y · Crystal structure of a Crenomytilus grayanus lectin in complex with galactosamine · X6X A201 · binds ASN27, HIS64, PRO65, TYR66, GLY67, GLY68, VAL79, HIS81 and 3 more
  • 5KGJ · X-ray structure of a glucosamine N-Acetyltransferase from Clostridium acetobutylicum in… · X6X A402 · binds ARG192, TRP193, GLU196, PRO252, ASP287, TRP288
  • 5KGJ · X-ray structure of a glucosamine N-acetyltransferase from clostridium acetobutylicum in… · X6X A402 · binds ARG192, TRP193, GLU196, ASP287, TRP288
  • 6OJB · Crystal structure of aspergillus fumigatus EGA3 complex with galactosamine · X6X A420 · binds LEU87, LEU88, TYR126, GLU133, TRP135, ARG136, TRP154, GLU157 and 3 more
  • 7F29 · Cryo-EM structure of the fibril formed by disaccharide-modified amyloid-BETA(1-42) · X6X G1 · binds TYR10, TYR10

Residues it binds most

HIS 6, TYR 11, GLY 6, ASP 9, PRO 7, GLU 5, TRP 3, VAL 6, ARG 5, ASN 5 (residue and the binding sites it lines).

Found with

  • ACO · Acetyl coenzyme *A
  • COA · Coenzyme A
  • EP1 · 3-[4-(2-hydroxyethyl)piperazin-1-yl]propane-1-sulfonic acid
  • EDO · 1,2-ethanediol
  • BMA · beta-D-mannopyranose
  • GAL · beta-D-galactopyranose
  • MAN · alpha-D-mannopyranose
  • NAG · 2-acetamido-2-deoxy-beta-D-glucopyranose
  • ACY · Acetic acid
  • GOL · Glycerol

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