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Ligand · WJP

WJP · Methyl (3R,6Z,10E,14E)-3,7,11,15,19-pentamethylicosa-6, 10,14,18-tetraen-1-yl dihydrogen diphosphate

WJP, Methyl (3R,6Z,10E,14E)-3,7,11,15,19-pentamethylicosa-6, 10,14,18-tetraen-1-yl dihydrogen diphosphate (C26 H48 O7 P2, 534.6 g/mol), in the MolNFT structures on GenesisL1: bound in 7 records (4 PDB entries). Every binding site with its…

Component
WJP
Formula
C26 H48 O7 P2
Class
ligand
Structures
7
PDB entries
4

Binding sites

WJP in 7 structures; the first of them:

  • 6WLW · The Vo region of human V-ATPase in state 1 (focused refinement) · WJP R905 · binds VAL71, ILE147, LEU150, ILE151, SER534, MET537, LYS538, VAL541 and 12 more
  • 6WM2 · Human V-ATPase in state 1 with SidK and ADP · WJP R907 · binds SER534, MET537, LYS538, VAL541, PHE583, LYS593, SER607, LEU608 and 11 more
  • 7KHR · Cryo-EM structure of bafilomycin A1-bound intact V-ATPase from bovine brain · WJP a901 · binds SER535, MET538, LYS539, VAL542, PHE584, ILE591, LYS594, SER608 and 13 more
  • 9BRD · Synaptic Vesicle V-ATPase with synaptophysin and SidK, State 3 · WJP a905 · binds SER535, MET538, LYS539, VAL542, PHE584, LEU587, ILE591, LYS594 and 15 more
  • 6WLW · The vo region of human V-ATPase in state 1 (focused refinement) · WJP R905 · binds ILE147, SER534, MET537, LYS538, VAL541, PHE583, LYS593, SER607 and 7 more
  • 6WM2 · Human V-ATPase in state 1 with sidk and ADP · WJP R907 · binds SER534, MET537, LYS538, VAL541, PHE583, LYS593, SER607, LEU608 and 8 more
  • 7KHR · Cryo-EM structure of bafilomycin A1-bound intact V-ATPase from bovine brain · WJP a901 · binds SER535, LYS539, VAL542, PHE584, ILE591, LYS594, SER608, LEU609 and 7 more

Residues it binds most

ILE 7, LEU 7, PHE 7, LYS 7, SER 7, VAL 7, ALA 7, THR 7, MET 6, PRO 1 (residue and the binding sites it lines).

Found with

  • BMA · beta-D-mannopyranose
  • GLC · alpha-D-glucopyranose
  • MAN · alpha-D-mannopyranose
  • NAG · 2-acetamido-2-deoxy-beta-D-glucopyranose
  • ADP · Adenosine-5'-diphosphate
  • CLR · Cholesterol
  • PTY · Phosphatidylethanolamine
  • WJS · (2~{S})-2-$l^{4}-azanyl-3-[[(2~{R})-3-octadecanoyloxy-2-oxidanyl-propoxy]-oxidanyl-oxidanylidene-$l^{6}-phosphanyl]oxy-propanoic acid
  • WSS · tri(methyl)-[2-[[(2~{R})-2-[(~{Z})-octadec-9-enoyl]oxy-3-[(~{E})-1-oxidanylideneoctadec-9-enoxy]propoxy]-oxidanyl-phosphoryl]oxyethyl]azanium
  • BGC · beta-D-glucopyranose
  • GAL · beta-D-galactopyranose
  • NGA · 2-acetamido-2-deoxy-beta-D-galactopyranose

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