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Ligand · VCA

VCA · Vaccenic acid

VCA, Vaccenic acid (C18 H34 O2, 282.5 g/mol), in the MolNFT structures on GenesisL1: bound in 11 records (9 PDB entries). Every binding site with its residues within 4.5 Å, the residues it binds most and the ligands found with it.

Component
VCA
Formula
C18 H34 O2
Class
ligand
Structures
11
PDB entries
9

Binding sites

VCA in 11 structures; the first of them:

  • 5HJ1 · Crystal structure of PDZ domain of pullulanase C protein of type II secretion system from… · VCA A301 · binds LEU186, GLN191, TYR196, LEU197, LEU221, LEU241, ILE260, LEU262 and 3 more
  • 5N4Q · Human myelin protein P2, mutant T51P · VCA A202 · binds PHE17, MET21, THR30, GLY34, ALA37, PRO39, THR54, SER56 and 7 more
  • 6NR1 · The X-ray crystal structure of Streptococcus pneumoniae Fatty Acid Kinase (Fak) B2… · VCA A401 · binds LEU29, THR62, SER63, GLN64, LEU93, SER94, THR119, ASP120 and 9 more
  • 5N4M · Human myelin protein P2, mutant I43N · VCA A202 · binds PHE17, MET21, VAL26, GLY34, ALA37, PRO39, THR54, PHE58 and 7 more
  • 5N4P · Human myelin P2, mutant I52T · VCA A203 · binds PHE17, THR30, GLY34, PRO39, SER56, PHE58, ALA76, ASP77 and 4 more
  • 5N4Q · Human myelin protein P2, mutant T51P · VCA A202 · binds PHE17, MET21, THR30, GLY34, ALA37, PRO39, THR54, SER56 and 7 more
  • 5V85 · The crystal structure of the protein of degv family COG1307 from ruminococcus gnavus atcc… · VCA A301 · binds LEU47, THR80, SER81, CYS82, LEU108, SER109, GLY110, ARG137 and 11 more
  • 6I8X · As-P18, an extracellular fatty acid binding protein · VCA A201 · binds TYR28, VAL35, ILE36, ALA39, VAL41, LYS43, THR62, LEU83 and 3 more
  • 6NR1 · The X-ray crystal structure of streptococcus pneumoniae fatty acid kinase (fak) B2… · VCA A401 · binds LEU29, THR62, SER63, GLN64, LEU93, SER94, THR119, ASP120 and 9 more
  • 6S2M · Perdeuterated human myelin protein P2 at 0.72-a resolution · VCA A202 · binds PHE16, MET20, THR29, GLY33, PRO38, THR53, SER55, ALA75 and 6 more
  • 6S2S · Hydrogenated human myelin protein P2 at 0.86-a resolution · VCA A204 · binds MET20, VAL25, GLY33, PRO38, THR53, SER55, PHE57, LYS58 and 8 more

Residues it binds most

THR 14, ALA 15, SER 11, ARG 14, LEU 9, ILE 10, PHE 9, TYR 11, ASP 10, GLY 8 (residue and the binding sites it lines).

Found with

  • PLM · Palmitic acid
  • MLT · D-malate
  • GOL · Glycerol
  • TAM · Tris(hydroxyethyl)aminomethane
  • NA · Sodium ion
  • PO4 · Phosphate ion
  • CIT · Citric acid
  • EDO · 1,2-ethanediol

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