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Ligand · V8D

V8D · Ethyl 1-[(1R)-1-phenylethyl]-1H-imidazole-5-carboxylate

V8D, Ethyl 1-[(1R)-1-phenylethyl]-1H-imidazole-5-carboxylate (C14 H16 N2 O2, 244.3 g/mol), in the MolNFT structures on GenesisL1: bound in 2 records (2 PDB entries). Every binding site with its residues within 4.5 Å, the residues it binds…

Component
V8D
Formula
C14 H16 N2 O2
Class
ligand
Structures
2
PDB entries
2

Binding sites

V8D in 2 structures; the first of them:

  • 8F6Y · Cryo-EM structure of Torpedo nicotinic acetylcholine receptor in complex with etomidate… · V8D A601 · binds SER226, PHE227, TYR277, PHE280, THR281, PHE284, PHE414, ILE417 and 3 more
  • 6X3V · Human gabaa receptor ALPHA1-BETA2-GAMMA2 subtype in complex with GABA plus etomidate · V8D A406 · binds MET261, THR262, ASN265, ASP282, LEU285, MET286, PHE289, VAL290 and 4 more

Residues it binds most

PHE 4, MET 2, THR 4, ILE 4, LEU 2, VAL 3, ASN 2, ASP 2, CYS 2, GLY 2 (residue and the binding sites it lines).

Found with

  • BMA · beta-D-mannopyranose
  • MAN · alpha-D-mannopyranose
  • NAG · 2-acetamido-2-deoxy-beta-D-glucopyranose
  • ABU · Gamma-amino-butanoic acid
  • CHT · Choline ion
  • CLR · Cholesterol
  • POV · (2S)-3-(hexadecanoyloxy)-2-[(9Z)-octadec-9-enoyloxy]propyl 2-(trimethylammonio)ethyl phosphate
  • DD9 · nonane

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