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Ligand · V5Z

V5Z · Dmhbo+

V5Z, Dmhbo+ (C22 H25 N4 O5 +1, 425.5 g/mol), in the MolNFT structures on GenesisL1: bound in 6 records (3 PDB entries). Every binding site with its residues within 4.5 Å, the residues it binds most and the ligands found with it.

Component
V5Z
Formula
C22 H25 N4 O5 +1
Class
ligand
Structures
6
PDB entries
3

Binding sites

V5Z in 6 structures; the first of them:

  • 7OA3 · Crystal structure of Chili RNA aptamer in complex with DMHBO+ (Iridium hexammine… · V5Z A101 · binds G9, G10, G13, G14, G15, G31, G32, G37
  • 7OAV · Crystal structure of Chili RNA aptamer in complex with DMHBO+ (Iridium III hexammine… · V5Z A101 · binds G9, G10, G13, G14, G15, G31, G32, G37 and 2 more
  • 7OAX · Crystal structure of the Chili RNA aptamer in complex with DMHBO+ · V5Z A102 · binds G9, G10, G13, G14, G15, G31, G32, G37 and 2 more
  • 7OA3 · Crystal structure of chili RNA aptamer in complex with dmhbo+ (iridium hexammine… · V5Z A101 · binds G9, G10, G13, G14, G15, G31, G32
  • 7OAV · Crystal structure of chili RNA aptamer in complex with dmhbo+ (iridium III hexammine… · V5Z A101 · binds G9, G10, G13, G14, G15, G31, G32, G25
  • 7OAX · Crystal structure of the chili RNA aptamer in complex with dmhbo+ · V5Z A102 · binds G9, G10, G13, G14, G15, G31, G32, C24 and 1 more

Residues it binds most

G 20, C 13, U 3 (residue and the binding sites it lines).

Found with

  • K · Potassium ion
  • IR · Iridium ion
  • MG · Magnesium ion
  • CL · Chloride ion
  • GTP · Guanosine-5'-triphosphate
  • SPM · Spermine
  • GOL · Glycerol

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