GL1X · GenesisL1 explorer

Ligand · UPF

UPF · Uridine-5'-diphosphate-2-deoxy-2-fluorogalactose

UPF, Uridine-5'-diphosphate-2-deoxy-2-fluorogalactose (C15 H23 F N2 O16 P2, 568.3 g/mol), in the MolNFT structures on GenesisL1: bound in 8 records (4 PDB entries). Every binding site with its residues within 4.5 Å, the residues it binds…

Component
UPF
Formula
C15 H23 F N2 O16 P2
Class
ligand
Structures
8
PDB entries
4

Binding sites

UPF in 8 structures; the first of them:

  • 1G9R · Crystal structure of galactosyltransferase lgtc in complex with mn and udp-2F-galactose · UPF A401 · binds ALA6, ALA7, ASP8, ASN10, TYR11, ILE76, HIS78, ILE79 and 19 more
  • 1GA8 · Crystal structure of galacosyltransferase lgtc in complex with donor and acceptor sugar… · UPF A501 · binds ALA6, ALA7, ASP8, ASN10, TYR11, ILE76, HIS78, ILE79 and 19 more
  • 1SS9 · Crystal Structural Analysis of Active Site Mutant Q189E of LgtC · UPF A401 · binds ALA6, ALA7, ASP8, ASN10, TYR11, ILE76, HIS78, ILE79 and 19 more
  • 2VFZ · Crystal structure of alpha-1,3 galactosyltransferase (R365K) in complex with… · UPF A1360 · binds PHE134, ALA135, VAL136, ARG138, TYR139, TRP195, ILE198, SER199 and 12 more
  • 1G9R · Crystal structure of galactosyltransferase lgtc in complex with mn and udp-2F-galactose · UPF A401 · binds ALA6, ALA7, ASP8, ASN10, TYR11, ILE76, HIS78, ILE79 and 19 more
  • 1GA8 · Crystal structure of galacosyltransferase lgtc in complex with donor and acceptor sugar… · UPF A501 · binds ALA6, ALA7, ASP8, ASN10, TYR11, ILE76, HIS78, ILE79 and 19 more
  • 1SS9 · Crystal structural analysis of active site mutant Q189E of lgtc · UPF A401 · binds ALA6, ALA7, ASP8, ASN10, TYR11, ILE76, HIS78, ILE79 and 19 more
  • 2VFZ · Crystal structure of alpha-1,3 galactosyltransferase (R365K) in complex with… · UPF A1360 · binds PHE134, ALA135, VAL136, ARG138, TYR139, TRP195, ILE198, SER199 and 12 more

Residues it binds most

ASP 10, ALA 10, ILE 10, TYR 10, HIS 10, ARG 10, ASN 6, GLY 6, THR 6, GLN 6 (residue and the binding sites it lines).

Found with

  • MN · Manganese (II) ion
  • BGC · beta-D-glucopyranose
  • Z9D · 4-deoxy-beta-D-xylo-hexopyranose
  • ACY · Acetic acid

GL1X is a live explorer of the GenesisL1 blockchain. Turn on JavaScript for search, charts and interactive views.