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Ligand · Z9D

Z9D · 4-deoxy-beta-D-xylo-hexopyranose

Z9D, 4-deoxy-beta-D-xylo-hexopyranose (C6 H12 O5, 164.2 g/mol), in the MolNFT structures on GenesisL1: bound in 2 records (1 PDB entry). Every binding site with its residues within 4.5 Å, the residues it binds most and the ligands found…

Component
Z9D
Formula
C6 H12 O5
Class
sugar
Structures
2
PDB entries
1

Binding sites

Z9D in 2 structures; the first of them:

  • 1GA8 · Crystal structure of galacosyltransferase lgtc in complex with donor and acceptor sugar… · Z9D B2 · binds ILE76, HIS78, ILE79, ASP130, PHE132, VAL133, ASN153, TYR186 and 3 more
  • 1GA8 · Crystal structure of galacosyltransferase lgtc in complex with donor and acceptor sugar… · Z9D B2 · binds ILE76, HIS78, ILE79, ASP130, PHE132, VAL133, ASN153, TYR186 and 3 more

Residues it binds most

ILE 2, ASN 2, ASP 2, CYS 2, GLN 2, GLY 2, HIS 2, PHE 2, TYR 2, VAL 2 (residue and the binding sites it lines).

Found with

  • UPF · Uridine-5'-diphosphate-2-deoxy-2-fluorogalactose
  • MN · Manganese (II) ion
  • BGC · beta-D-glucopyranose

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