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Ligand · SAR

SAR · Sarcosine

SAR, Sarcosine (C3 H7 N O2, 89.1 g/mol), in the MolNFT structures on GenesisL1: bound in 10 records (10 PDB entries). Every binding site with its residues within 4.5 Å, the residues it binds most and the ligands found with it.

Component
SAR
Formula
C3 H7 N O2
Class
ligand
Structures
10
PDB entries
10

Binding sites

SAR in 10 structures; the first of them:

  • 3L8H · Crystal Structure of D,D-heptose 1.7-bisphosphate phosphatase from B. bronchiseptica… · SAR D2008 · binds ASP9, ASP15, SER16, ASP17, PHE19, ARG129, ASN148
  • 3QSE · Crystal structure for the complex of substrate-reduced msox with sarcosine · SAR A401 · binds ILE50, ARG52, TYR55, MET245, TYR254, HIS269, TYR317, GLY344 and 2 more
  • 3T26 · Orthorhombic trypsin (bovine) in the presence of sarcosine · SAR A261 · binds PHE41, CYS42, HIS57, GLN192, GLY193, ASP194, SER195
  • 3T2I · Tetragonal thermolysin in the presence of sarcosine · SAR E2001 · binds ILE1, TYR29
  • 4OHZ · bound to ssRNA tetranucleotide GAAA, ADP, and Mg2+ · SAR A503 · binds TYR77, GLU286
  • 4OI0 · bound to ssRNA dinucleotide GC, ADP, AlF4-, and Mg2+(transition state, data set I) · SAR A504 · binds TYR77
  • 4QFU · Crystal structure of a glycoside hydrolase family 5 (BVU_2644) from Bacteroides vulgatus… · SAR C502 · binds ARG216, ARG218, GLY239, HIS240, ARG241, GLY291, LEU292, HIS293
  • 5GWX · Crystal structure of glycine sarcosine N-methyltransferase from Methanohalophilus… · SAR A302 · binds PHE30, GLY133, ASN134, HIS138, ARG167, TYR206, LEU216, MET218
  • 5HIL · Crystal structure of glycine sarcosine N-methyltransferase from Methanohalophilus… · SAR A302 · binds GLY133, ASN134, HIS138, ARG167, TYR206, MET218
  • 7XXD · Orf1-sarcosine complex · SAR A702 · binds MET57, GLU63, HIS284, ALA297, ARG342, ARG368

Residues it binds most

ARG 19, HIS 16, GLY 10, MET 12, TYR 8, GLU 9, ALA 8, ASN 4, ASP 2, GLN 3 (residue and the binding sites it lines).

Found with

  • MG · Magnesium ion
  • CL · Chloride ion
  • ADP · Adenosine-5'-diphosphate
  • FAD · Flavin-adenine dinucleotide
  • CA · Calcium ion
  • ZN · Zinc ion
  • 2PE · Nonaethylene glycol
  • EDO · 1,2-ethanediol
  • ALF · Tetrafluoroaluminate ion
  • BEN · Benzamidine
  • SAH · S-adenosyl-L-homocysteine
  • SAM · S-adenosylmethionine

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