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Ligand · RUU

RUU · alpha-L-ribulofuranose

RUU, alpha-L-ribulofuranose (C5 H10 O5, 150.1 g/mol), in the MolNFT structures on GenesisL1: bound in 8 records (4 PDB entries). Every binding site with its residues within 4.5 Å, the residues it binds most and the ligands found with it.

Component
RUU
Formula
C5 H10 O5
Class
sugar
Structures
8
PDB entries
4

Binding sites

RUU in 8 structures; the first of them:

  • 4Q0Q · Crystal structure of Acinetobacter sp. DL28 L-ribose isomerase in complex with L-ribulose · RUU A502 · binds ILE65, LYS93, MET95, CYS103, HIS106, HIS108, LYS111, GLU113 and 8 more
  • 4Q0V · Crystal structure of Acinetobacter sp. DL28 L-ribose isomerase mutant E204Q in complex… · RUU A503 · binds MET33, ASN35, SER37, ALA38, ILE65, PHE66, GLU67, THR213 and 2 more
  • 4QE1 · Room temperature X-ray structure of D-xylose isomerase in complex with two Cd2+ ions and… · RUU A403 · binds TRP16, HIS54, THR90, PHE94, VAL135, TRP137, GLU181, GLU217 and 3 more
  • 4QE5 · Room temperature X-ray structure of D-xylose isomerase in complex with two Mg2+ ions and… · RUU A403 · binds TRP16, HIS54, THR90, PHE94, VAL135, TRP137, GLU181, GLU217 and 3 more
  • 4Q0Q · Crystal structure of acinetobacter sp. DL28 L-ribose isomerase in complex with L-ribulose · RUU A502 · binds ILE65, LYS93, MET95, CYS103, HIS106, HIS108, LYS111, GLU113 and 8 more
  • 4Q0V · Crystal structure of acinetobacter sp. DL28 L-ribose isomerase mutant E204Q in complex… · RUU A503 · binds MET33, ASN35, SER37, ALA38, ILE65, PHE66, GLU67, THR213 and 2 more
  • 4QE1 · Room temperature X-ray structure of D-xylose isomerase in complex with two CD2+ ions and… · RUU A403 · binds TRP16, HIS54, THR90, PHE94, VAL135, TRP137, GLU181, GLU217 and 3 more
  • 4QE5 · Room temperature X-ray structure of D-xylose isomerase in complex with two MG2+ ions and… · RUU A403 · binds TRP16, HIS54, THR90, PHE94, VAL135, TRP137, GLU181, GLU217 and 3 more

Residues it binds most

ARG 16, GLU 14, ASP 12, HIS 6, THR 14, PHE 10, SER 8, TRP 8, TYR 12, ASN 10 (residue and the binding sites it lines).

Found with

  • NCO · Cobalt hexammine(iii)
  • CO · Cobalt (II) ion
  • QDK · L-ribulose
  • CD · Cadmium ion
  • MG · Magnesium ion

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