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Ligand · QDK

QDK · L-ribulose

QDK, L-ribulose (C5 H10 O5, 150.1 g/mol), in the MolNFT structures on GenesisL1: bound in 6 records (3 PDB entries). Every binding site with its residues within 4.5 Å, the residues it binds most and the ligands found with it.

Component
QDK
Formula
C5 H10 O5
Class
sugar
Structures
6
PDB entries
3

Binding sites

QDK in 6 structures; the first of them:

  • 3QDK · Structural insight on mechanism and diverse substrate selection strategy of ribulokinase · QDK A573 · binds THR95, ALA96, TRP126, LYS208, VAL273, ASP274, ALA275, HIS276 and 2 more
  • 4Q0Q · Crystal structure of Acinetobacter sp. DL28 L-ribose isomerase in complex with L-ribulose · QDK A504 · binds THR30, LYS32, MET33, GLU67, SER68, LEU69, ASN70, GLU71
  • 4Q0V · Crystal structure of Acinetobacter sp. DL28 L-ribose isomerase mutant E204Q in complex… · QDK A502 · binds PHE42, ILE65, LYS93, MET95, CYS103, HIS106, HIS108, LYS111 and 9 more
  • 3QDK · Structural insight on mechanism and diverse substrate selection strategy of ribulokinase · QDK A573 · binds THR95, ALA96, TRP126, LYS208, VAL273, ASP274, ALA275, HIS276 and 2 more
  • 4Q0Q · Crystal structure of acinetobacter sp. DL28 L-ribose isomerase in complex with L-ribulose · QDK A504 · binds THR30, LYS32, MET33, GLU67, SER68, LEU69, ASN70, GLU71
  • 4Q0V · Crystal structure of acinetobacter sp. DL28 L-ribose isomerase mutant E204Q in complex… · QDK A502 · binds PHE42, ILE65, LYS93, MET95, CYS103, HIS106, HIS108, LYS111 and 9 more

Residues it binds most

GLU 8, LYS 8, HIS 4, ASN 6, MET 6, PHE 2, ALA 2, CYS 4, LEU 4, SER 4 (residue and the binding sites it lines).

Found with

  • NCO · Cobalt hexammine(iii)
  • CO · Cobalt (II) ion
  • RUU · alpha-L-ribulofuranose

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