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Ligand · Q6L

Q6L · (1~{S})-3,5,5-trimethyl-4-[(3~{E},5~{E},7~{E},9~{E},11~{E},13~{E},15~{E},17~{E})-3,7,12,16-tetramethyl-18-[(1~{R},4~{R})-2,6,6-trimethyl-4-oxidanyl-cyclohex-2-en-1-yl]octadeca-3,5,7,9,11,13,15,17-octaenyl]cyclohex-3-en-1-ol

Q6L, (1~{S})-3,5,5-trimethyl-4-[(3~{E},5~{E},7~{E},9~{E},11~{E},13~{E},15~{E},17~{E})-3,7,12,16-tetramethyl-18-[(1~{R},4~{R})-2,6,6-trimethyl-4-oxidanyl-cyclohex-2-en-1-yl]octadeca-3,5,7,9,11,13,15,17-octaenyl]cyclohex-3-en-1-ol (C40 H58…

Component
Q6L
Formula
C40 H58 O2
Class
ligand
Structures
4
PDB entries
4

Binding sites

Q6L in 4 structures; the first of them:

  • 7YCA · Cryo-EM structure of the PSI-LHCI-Lhcp supercomplex from Ostreococcus tauri · Q6L 2616 · binds MET89, LEU90, VAL92, ALA93, VAL96, PHE176, ASP177, LYS178 and 14 more
  • 8HG3 · Cryo-EM structure of the Lhcp complex from Ostreococcus tauri · Q6L S315 · binds MET69, VAL72, THR73, TRP76, PHE163, ASP164, PRO165, LEU166 and 11 more

Residues it binds most

LEU 75, PHE 70, TRP 69, ALA 56, ILE 60, PRO 53, GLY 57, VAL 41, THR 39, HIS 37 (residue and the binding sites it lines).

Found with

  • CHL · Chlorophyll B
  • CLA · Chlorophyll A
  • IWJ · (3~{E},5~{E},7~{E},9~{E},11~{E},13~{E},15~{E},17~{E})-1-[(1~{S},4~{S})-2,2-dimethyl-6-methylidene-1,4-bis(oxidanyl)cyclohexyl]-3,7,12,16-tetramethyl-18-[(1~{R},4~{R})-2,6,6-trimethyl-4-oxidanyl-cyclohex-2-en-1-yl]octadeca-3,5,7,9,11,13,15,17-octaen-2-one
  • KC2 · Chlorophyll c2
  • NEX · (1R,3R)-6-{(3E,5E,7E,9E,11E,13E,15E,17E)-18-[(1S,4R, 6R)-4-hydroxy-2,2,6-trimethyl-7-oxabicyclo[4.1.0]hept-1-yl]-3,7,12,16-tetramethyloctadeca-1,3,5,7,9,11,13, 15,17-nonaenylidene}-1,5,5-trimethylcyclohexane-1,3-diol
  • BCR · Beta-carotene
  • CL0 · Chlorophyll A isomer
  • DGD · Digalactosyl diacyl glycerol (dgdg)
  • LHG · 1,2-dipalmitoyl-phosphatidyl-glycerole
  • LMG · 1,2-distearoyl-monogalactosyl-diglyceride
  • PQN · Phylloquinone
  • SF4 · Iron/sulfur cluster

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