Ligand · OCD

OCD · octadecanal

OCD, octadecanal (C18 H36 O, 268.5 g/mol), in the MolNFT structures on GenesisL1: bound in 6 records (4 PDB entries). Every binding site with its residues within 4.5 Å, the residues it binds most and the ligands found with it.

Component: OCD
Formula: C18 H36 O
Class: ligand
Structures: 6
PDB entries: 4

Binding sites

OCD in 6 structures; the first of them:

5K52 · Crystal structures of aldehyde deformylating oxygenase from Limnothrix sp. KNUA012 · OCD A500 · binds TYR21, ILE24, ASN25, ILE27, VAL28, GLY31, GLU32, ALA35 and 15 more
6JZY · Crystal structure of AAR with NADPH and stearyl in complex with ADO binding a long chain… · OCD A402 · binds GLY6, HIS7, LEU8, VAL17, TYR59, GLU61, GLY99, GLY100 and 7 more
5K52 · Crystal structures of aldehyde deformylating oxygenase from limnothrix sp. KNUA012 · OCD A500 · binds TYR21, ILE24, ASN25, ILE27, VAL28, GLY31, GLU32, GLU60 and 11 more
6JZU · The crystal structure of acyl-acyl carrier protein (acyl-acp) reductase (aar) in complex… · OCD A500 · binds HIS7, LEU8, VAL17, SER18, MET21, TYR23, TYR26, TRP34 and 13 more
6JZY · Crystal structure of aar with NADPH and stearyl in complex with ado binding a long chain… · OCD A402 · binds GLY6, HIS7, LEU8, VAL17, TYR59, GLU61, GLY99, GLY100 and 7 more
6SL5 · Dunaliella photosystem I supercomplex · OCD A5003 · binds TYR160, ILE164

Residues it binds most

TYR 8, GLU 7, ILE 8, PHE 7, ALA 7, GLY 7, VAL 7, CYS 7, MET 5, ASN 3 (residue and the binding sites it lines).

Found with

PL3 · Hexadecan-1-ol
FE2 · Fe (II) ion
NDP · Nadph dihydro-nicotinamide-adenine-dinucleotide phosphate
3PH · 1,2-diacyl-glycerol-3-sn-phosphate
4RF · Tripalmitoylglycerol
BCR · Beta-carotene
CHL · Chlorophyll B
CL0 · Chlorophyll A isomer
CLA · Chlorophyll A
DGD · Digalactosyl diacyl glycerol (dgdg)
LHG · 1,2-dipalmitoyl-phosphatidyl-glycerole
LMG · 1,2-distearoyl-monogalactosyl-diglyceride

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