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Ligand · LMK

LMK · trimethyl-[(2~{R})-1-oxidanyl-1-oxidanylidene-4-[(2~{S})-2-[(1~{S})-1-oxidanyloctadecoxy]-3-[(1~{R})-1-oxidanyloctadecoxy]propoxy]butan-2-yl]azanium

LMK, trimethyl-[(2~{R})-1-oxidanyl-1-oxidanylidene-4-[(2~{S})-2-[(1~{S})-1-oxidanyloctadecoxy]-3-[(1~{R})-1-oxidanyloctadecoxy]propoxy]butan-2-yl]azanium (C46 H94 N O7 +1, 773.3 g/mol), in the MolNFT structures on GenesisL1: bound in 3…

Component
LMK
Formula
C46 H94 N O7 +1
Class
ligand
Structures
3
PDB entries
3

Binding sites

LMK in 3 structures; the first of them:

  • 7PIW · Stacked stretched Dunaliella PSII · LMK C527 · binds VAL49, TYR85, PHE97, PRO98, VAL101, SER102, LEU105, HIS106 and 9 more
  • 6SL5 · Dunaliella photosystem I supercomplex · LMK 2807
  • 7PI0 · Unstacked compact dunaliella psii · LMK C527 · binds VAL49, TYR85, PHE97, PRO98, VAL101, SER102, LEU105, HIS106 and 6 more

Residues it binds most

LEU 6, PHE 6, SER 6, VAL 6, ARG 7, PRO 7, GLY 6, HIS 6, TYR 6, ASP 4 (residue and the binding sites it lines).

Found with

  • 3PH · 1,2-diacyl-glycerol-3-sn-phosphate
  • 4RF · Tripalmitoylglycerol
  • BCR · Beta-carotene
  • CHL · Chlorophyll B
  • CLA · Chlorophyll A
  • DGD · Digalactosyl diacyl glycerol (dgdg)
  • LHG · 1,2-dipalmitoyl-phosphatidyl-glycerole
  • LMG · 1,2-distearoyl-monogalactosyl-diglyceride
  • LUT · (3R,3'R,6S)-4,5-didehydro-5,6-dihydro-beta,beta-carotene-3,3'-diol
  • PTY · Phosphatidylethanolamine
  • SQD · 1,2-di-O-acyl-3-O-[6-deoxy-6-sulfo-alpha-D-glucopyranosyl]-sn-glycerol
  • XAT · (3S,5R,6S,3'S,5'R,6'S)-5,6,5',6'-diepoxy-5,6,5',6'-tetrahydro-beta,beta-carotene-3,3'-diol

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