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Ligand · NCD

NCD · N-carbamoyl-L-aspartate

NCD, N-carbamoyl-L-aspartate (C5 H8 N2 O5, 176.1 g/mol), in the MolNFT structures on GenesisL1: bound in 9 records (6 PDB entries). Every binding site with its residues within 4.5 Å, the residues it binds most and the ligands found with it.

Component
NCD
Formula
C5 H8 N2 O5
Class
ligand
Structures
9
PDB entries
6

Binding sites

NCD in 9 structures; the first of them:

  • 6HFR · Human dihydroorotase mutant F1563Y co-crystallized with carbamoyl aspartate at pH 7.0 · NCD A1904 · binds HIS1471, HIS1473, ARG1475, ASN1505, KCX1556, TYR1558, THR1562, TYR1563 and 9 more
  • 6HFS · Human dihydroorotase mutant F1563Y co-crystallized with carbamoyl aspartate at pH 6.5 · NCD A1905 · binds HIS1471, HIS1473, ARG1475, ASN1505, KCX1556, THR1562, TYR1563, HIS1590 and 8 more
  • 6HFU · Human dihydroorotase mutant F1563Y co-crystallized with carbamoyl aspartate at pH 7.5 · NCD A1904 · binds HIS1471, HIS1473, ARG1475, ASN1505, KCX1556, TYR1558, THR1562, TYR1563 and 9 more
  • 8PBH · Mutant R1617Q of the dihydroorotase domain of human CAD protein bound to the substrate… · NCD A1901 · binds HIS1471, HIS1473, ARG1475, ASN1505, KCX1556, TYR1558, THR1562, PHE1563 and 9 more
  • 8PBP · Mutant R1785C of the dihydroorotase domain of human CAD protein bound to the substrate… · NCD A1901 · binds HIS1471, HIS1473, ARG1475, ASN1505, KCX1556, TYR1558, THR1562, PHE1563 and 9 more
  • 6HFR · Human dihydroorotase mutant F1563Y co-crystallized with carbamoyl aspartate at pH 7.0 · NCD A1904 · binds HIS1471, HIS1473, ARG1475, ASN1505, KCX1556, THR1562, TYR1563, HIS1590 and 8 more
  • 6HFS · Human dihydroorotase mutant F1563Y co-crystallized with carbamoyl aspartate at pH 6.5 · NCD A1905 · binds HIS1471, HIS1473, ARG1475, ASN1505, KCX1556, THR1562, TYR1563, HIS1590 and 8 more
  • 6HFU · Human dihydroorotase mutant F1563Y co-crystallized with carbamoyl aspartate at pH 7.5 · NCD A1904 · binds HIS1471, HIS1473, ARG1475, ASN1505, KCX1556, THR1562, TYR1563, HIS1590 and 8 more
  • 6JL4 · Crystal structure of aspartate transcarbamoylase from trypanosoma cruzi in complex with… · NCD A401 · binds THR65, ARG113, HIS141, GLN144, ARG174, THR175, ARG242, GLN244 and 4 more

Residues it binds most

HIS 9, ARG 9, PRO 9, THR 9, TYR 8, ALA 8, ASN 8, ASP 8, GLY 8, KCX 8 (residue and the binding sites it lines).

Found with

  • ZN · Zinc ion
  • FMT · Formic acid
  • CP · Phosphoric acid mono(formamide)ester
  • DOR · (4S)-2,6-dioxohexahydropyrimidine-4-carboxylic acid
  • NA · Sodium ion
  • PO4 · Phosphate ion

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