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Ligand · LP3

LP3 · (7R)-4,7-dihydroxy-N,N,N-trimethyl-10-oxo-3,5,9-trioxa-4-phosphaheptacosan-1-aminium 4-oxide

LP3, (7R)-4,7-dihydroxy-N,N,N-trimethyl-10-oxo-3,5,9-trioxa-4-phosphaheptacosan-1-aminium 4-oxide (C26 H55 N O7 P +1, 524.7 g/mol), in the MolNFT structures on GenesisL1: bound in 2 records (2 PDB entries). Every binding site with its…

Component
LP3
Formula
C26 H55 N O7 P +1
Class
ligand
Structures
2
PDB entries
2

Binding sites

LP3 in 2 structures; the first of them:

  • 9B8O · Synaptic Vesicle V-ATPase with synaptophysin and SidK, State 3, Vo · LP3 a903 · binds ARG70, ILE414, LEU415, LEU418, CYS467, PHE468, LYS470, SER471 and 20 more
  • 9BRD · Synaptic Vesicle V-ATPase with synaptophysin and SidK, State 3 · LP3 a907 · binds ARG70, ILE414, LEU415, LEU418, CYS467, PHE468, LYS470, SER471 and 20 more

Residues it binds most

LEU 2, ILE 2, PHE 2, TRP 2, MET 2, SER 2, VAL 2, ALA 2, ARG 2, ASN 2 (residue and the binding sites it lines).

Found with

  • CLR · Cholesterol
  • PC1 · 1,2-diacyl-sn-glycero-3-phosphocholine
  • PTY · Phosphatidylethanolamine
  • WJP · Methyl (3R,6Z,10E,14E)-3,7,11,15,19-pentamethylicosa-6, 10,14,18-tetraen-1-yl dihydrogen diphosphate
  • BMA · beta-D-mannopyranose
  • GLC · alpha-D-glucopyranose
  • MAN · alpha-D-mannopyranose
  • NAG · 2-acetamido-2-deoxy-beta-D-glucopyranose
  • ADP · Adenosine-5'-diphosphate

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