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Ligand · IDG

IDG · 2,6-diamino-2,6-dideoxy-beta-L-idopyranose

IDG, 2,6-diamino-2,6-dideoxy-beta-L-idopyranose (C6 H14 N2 O4, 178.2 g/mol), in the MolNFT structures on GenesisL1: bound in 6 records (3 PDB entries). Every binding site with its residues within 4.5 Å, the residues it binds most and the…

Component
IDG
Formula
C6 H14 N2 O4
Class
sugar
Structures
6
PDB entries
3

Binding sites

IDG in 6 structures; the first of them:

  • 1NEM · Saccharide-RNA recognition in the neomycin B / RNA aptamer complex · IDG B2 · binds C7, U8, A16, A17, G18
  • 1PBR · Structure of 16S ribosomal RNA, NMR, minimized average structure · IDG B2 · binds U5, C6, C8, G17, U18, G19
  • 1QD3 · HIV-1 tar RNA/NEOMYCIN B complex · IDG B2 · binds A20, G21, G43, G44
  • 1NEM · Saccharide-RNA recognition in the neomycin B / RNA aptamer complex · IDG B2 · binds C7, U8, A16, A17, G18
  • 1PBR · Structure of 16S ribosomal RNA, NMR, minimized average structure · IDG B2 · binds U5, C6, C8, G17, U18, G19
  • 1QD3 · HIV-1 tar RNA/NEOMYCIN B complex · IDG B2 · binds A20, G21, G43, G44

Residues it binds most

G 6, A 4, C 4, U 4 (residue and the binding sites it lines).

Found with

  • BDR · beta-D-ribofuranose
  • CYY · 2-deoxystreptamine
  • BDG · 2,6-diamino-2,6-dideoxy-alpha-D-glucopyranose
  • NEB · 2-deoxy-D-streptamine
  • PA1 · 2-amino-2-deoxy-alpha-D-glucopyranose
  • RIB · alpha-D-ribofuranose

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