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Ligand · CYY

CYY · 2-deoxystreptamine

CYY, 2-deoxystreptamine (C6 H14 N2 O3, 162.2 g/mol), in the MolNFT structures on GenesisL1: bound in 4 records (2 PDB entries). Every binding site with its residues within 4.5 Å, the residues it binds most and the ligands found with it.

Component
CYY
Formula
C6 H14 N2 O3
Class
ligand
Structures
4
PDB entries
2

Binding sites

CYY in 4 structures; the first of them:

  • 1PBR · Structure of 16S ribosomal RNA, NMR, minimized average structure · CYY A102 · binds U5, C6, A21, G22, U23, C24
  • 1QD3 · HIV-1 tar RNA/NEOMYCIN B complex · CYY A47 · binds A20, G21, U23, U42, G43
  • 1PBR · Structure of 16S ribosomal RNA, NMR, minimized average structure · CYY A102 · binds U5, C6, A21, G22, U23, C24
  • 1QD3 · HIV-1 tar RNA/NEOMYCIN B complex · CYY A47 · binds A20, G21, U23, U42, G43

Residues it binds most

U 4, G 4, A 4, C 2 (residue and the binding sites it lines).

Found with

  • IDG · 2,6-diamino-2,6-dideoxy-beta-L-idopyranose
  • BDR · beta-D-ribofuranose
  • PA1 · 2-amino-2-deoxy-alpha-D-glucopyranose
  • RIB · alpha-D-ribofuranose
  • BDG · 2,6-diamino-2,6-dideoxy-alpha-D-glucopyranose

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