MolNFT v1 · #18029 · RNA
Structure of 16S ribosomal RNA, NMR, minimized average structure
1PBR: “Structure of 16S ribosomal RNA, NMR, minimized average structure”. Solution nmr, 4 ligands (BDR, IDG, PA1), 1 pocket (best druggability 0.49). MolNFT v1 #18029 on GenesisL1: 3D structure, binding sites and pockets in GL1X.
- PDB
- 1PBR
- Type
- RNA
- Length
- 27 nucleotides
- Chains
- 1
- Method
- solution nmr
- Collection
- MolNFT v1 / PDB
- Contract
- 0xDE3723766Bc32dcACD03C17BaA400A7B36837Eba
- Owner
- 0x3396CDB397284571d12822B4ae1189a8E22AAAAA
- Molecule
- 16S ribosomal RNA
- Ligands
- BDR, IDG, PA1, CYY
- Pockets
- 1 · best druggability 0.49
Structure
solution nmr · 1 distinct chain.
| Chain | Molecule | Type | Residues | Secondary structure | UniProt |
|---|---|---|---|---|---|
| A | 16S ribosomal RNA | rna | 27 | — | — |
Ligands and binding sites
- BDR · beta-D-ribofuranose · ligand · chains A
- IDG · 2,6-diamino-2,6-dideoxy-beta-L-idopyranose · ligand · chains A
- PA1 · 2-amino-2-deoxy-alpha-D-glucopyranose · ligand · chains A
- CYY · 2-deoxystreptamine · ligand · chains A
Binding sites are the residues within 4.5 Å of a ligand's heavy atoms.
Pockets
1 pocket found on a 1 Å grid, 0 with a druggability of 0.5 or more.
| Volume (ų) | Druggability | Buriedness | Lining residues | Inside | |
|---|---|---|---|---|---|
| 1 | 264 | 0.49 | 0.74 | 14 | BDR, IDG, PA1, CYY |
Compared structures
- 1PBR · Structure of 16S ribosomal RNA, NMR, minimized average structure · the same entry in another collection · chain A against A, TM-score 1.00
Analyse
- Open in the research workbench: secondary structure, accessibility, pockets, interfaces, conservation, variants, modifications, peptides and crosslinks on the 3D structure
- Elsewhere: RCSB PDB 1PBR · PDBe 1PBR
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