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Ligand · NEB

NEB · 2-deoxy-D-streptamine

NEB, 2-deoxy-D-streptamine (C6 H15 N2 O3 +1, 163.2 g/mol), in the MolNFT structures on GenesisL1: bound in 2 records (1 PDB entry). Every binding site with its residues within 4.5 Å, the residues it binds most and the ligands found with it.

Component
NEB
Formula
C6 H15 N2 O3 +1
Class
ligand
Structures
2
PDB entries
1

Binding sites

NEB in 2 structures; the first of them:

  • 1NEM · Saccharide-RNA recognition in the neomycin B / RNA aptamer complex · NEB A28 · binds U8, G9, G10, G11, A16, U19, U20, U21 and 1 more
  • 1NEM · Saccharide-RNA recognition in the neomycin B / RNA aptamer complex · NEB A28 · binds U8, G9, G10, G11, A16, U19, U20, U21 and 1 more

Residues it binds most

U 2, G 2, A 2 (residue and the binding sites it lines).

Found with

  • BDR · beta-D-ribofuranose
  • BDG · 2,6-diamino-2,6-dideoxy-alpha-D-glucopyranose
  • IDG · 2,6-diamino-2,6-dideoxy-beta-L-idopyranose

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