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Ligand · I7Y

I7Y · (2R)-2-(methoxymethyl)-4-{[(25R)-spirost-5-en-3beta-yl]oxy}butyl 4-O-alpha-D-glucopyranosyl-beta-D-glucopyranoside

I7Y, (2R)-2-(methoxymethyl)-4-{[(25R)-spirost-5-en-3beta-yl]oxy}butyl 4-O-alpha-D-glucopyranosyl-beta-D-glucopyranoside (C45 H74 O15, 855.1 g/mol), in the MolNFT structures on GenesisL1: bound in 3 records (3 PDB entries). Every binding…

Component
I7Y
Formula
C45 H74 O15
Class
ligand
Structures
3
PDB entries
3

Binding sites

I7Y in 3 structures; the first of them:

  • 7T3N · R184Q/E191Q mutant of rat vesicular glutamate transporter 2 (VGLUT2) · I7Y A602 · binds GLY66, LEU67, PRO68, ARG70, TYR71, ILE75, GLY78, LEU79 and 10 more
  • 8SMR · cytochrome bc1-cbb3 supercomplex from Pseudomonas aeruginosa · I7Y I504 · binds ALA302, VAL303, PRO304, MET308, VAL311, ALA312, ALA315, ARG372 and 4 more
  • 8SNH · cytochrome bc1-cbb3 supercomplex from Pseudomonas aeruginosa · I7Y I501 · binds ALA302, VAL303, PRO304, MET308, VAL311, ALA312, ALA315, ARG372 and 4 more

Residues it binds most

ALA 5, VAL 4, ILE 5, ARG 5, GLY 3, PRO 5, THR 5, MET 4, PHE 4, TYR 3 (residue and the binding sites it lines).

Found with

  • FES · Fe2/s2 (inorganic) cluster
  • HEC · Heme C
  • HEM · Protoporphyrin IX containing Fe
  • U10 · Ubiquinone-10
  • CA · Calcium ion
  • CU · Copper (II) ion
  • C5B · (1S,3R)-1-aminocyclopentane-1,3-dicarboxylic acid

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