Ligand · GP4
GP4 · 2-amino-2-deoxy-4-O-phosphono-alpha-D-glucopyranose
GP4, 2-amino-2-deoxy-4-O-phosphono-alpha-D-glucopyranose (C6 H14 N O8 P, 259.1 g/mol), in the MolNFT structures on GenesisL1: bound in 7 records (7 PDB entries). Every binding site with its residues within 4.5 Å, the residues it binds most…
- Component
- GP4
- Formula
- C6 H14 N O8 P
- Class
- sugar
- Structures
- 7
- PDB entries
- 7
Binding sites
GP4 in 7 structures; the first of them:
- 1FCP · Ferric hydroxamate uptake receptor (fhua) from E.COLI in complex with bound… · GP4 B2 · binds GLU304, LYS351, GLN353, ARG382
- 1Q9W · S45-18 Fab pentasaccharide bisphosphate complex · GP4 E2
- 8WO1 · Cryo-EM Structure of Human TLR4/MD-2/DLAM5 Complex · GP4 A703 · binds LYS362
- 8WQT · Cryo-EM Structure of Mouse TLR4/MD-2/DLAM1 complex · GP4 B708 · binds ARG434, LYS360
- 8WRY · Cryo-EM Structure of Mouse TLR4/MD-2/DLAM3 Complex · GP4 B708 · binds SER413, ARG434, GLN339, LYS360
- 8WSA · Cryo-EM Structure of Mouse TLR4/MD-2/DLAM5 Complex · GP4 A706 · binds LYS360
- 8WTA · Cryo-EM Structure of Human TLR4/MD-2/DLAM3 Complex · GP4 A703 · binds ARG264, LYS341, LYS362
Residues it binds most
LYS 11, ARG 7, GLN 3, SER 2, GLU 1 (residue and the binding sites it lines).
Found with
- 0IL · (3R)-3-(tetradecanoyloxy)tetradecanoic acid
- 2IL · (3R)-3-(dodecanoyloxy)tetradecanoic acid
- NAG · 2-acetamido-2-deoxy-beta-D-glucopyranose
- A1L01 · (3~{S})-3-decanoyloxytetradecanoic acid
- GP1 · 2-amino-2-deoxy-1-O-phosphono-alpha-D-glucopyranose
- BMA · beta-D-mannopyranose
- KDO · 3-deoxy-alpha-D-manno-oct-2-ulopyranosonic acid
- X6N · [(2~{R},3~{S},4~{R},5~{S})-2-(hydroxymethyl)-5-methoxy-4,6-bis(oxidanyl)oxan-3-yl] dihydrogen phosphate
- XIQ · 2-(hydroxymethyl)-5-methoxy-3,6-bis(oxidanyl)pyran-4-one
- AAE · Acetoacetic acid
- EA2 · Aminoethanolpyrophosphate
- FCI · Ferricrocin-iron
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