Ligand · GLD
GLD · 4,6-dideoxy-alpha-D-xylo-hexopyranose
GLD, 4,6-dideoxy-alpha-D-xylo-hexopyranose (C6 H12 O4, 148.2 g/mol), in the MolNFT structures on GenesisL1: bound in 9 records (9 PDB entries). Every binding site with its residues within 4.5 Å, the residues it binds most and the ligands…
- Component
- GLD
- Formula
- C6 H12 O4
- Class
- sugar
- Structures
- 9
- PDB entries
- 9
Binding sites
GLD in 9 structures; the first of them:
- 1E3Z · Acarbose complex of chimaeric amylase from B. amyloliquefaciens and B. licheniformis at… · GLD B2 · binds LYS68, GLY106, ALA107, TRP136
- 1UA7 · Crystal Structure Analysis of Alpha-Amylase from Bacillus Subtilis complexed with Acarbose · GLD B2 · binds TYR59, GLN63, PHE105, LEU142, LEU144
- 1UH3 · Thermoactinomyces vulgaris R-47 alpha-amylase/acarbose complex · GLD C2 · binds PHE310, LEU311, ALA357, GLN359, TYR360, GLU396, TRP398, ASP472
- 1UKS · Crystal structure of F183L/F259L mutant cyclodextrin glucanotransferase complexed with a… · GLD C2 · binds TYR100, HIS140, TYR195, LEU197, ARG227, ASP229, GLU257, HIS327 and 2 more
- 1UKT · Crystal structure of Y100L mutant cyclodextrin glucanotransferase compexed with an… · GLD C3 · binds LEU194, TYR195, ASP229, ALA230, HIS233, ASP328
- 1V3L · Crystal structure of F283L mutant cyclodextrin glycosyltransferase complexed with a… · GLD C2 · binds LEU194, TYR195, ALA230, LYS232, HIS233, GLU257, TRP258, PHE259
- 1V3M · Crystal structure of F283Y mutant cyclodextrin glycosyltransferase complexed with a… · GLD C2 · binds LEU194, TYR195, ASP229, ALA230, HIS233, GLU257, TRP258, PHE259 and 1 more
- 1WPC · Crystal structure of maltohexaose-producing amylase complexed with pseudo-maltononaose · GLD B4 · binds GLY109, GLY110, ALA111, TRP140, TRP167, GLN169, TYR203
- 3BC9 · Alpha-amylase B in complex with acarbose · GLD C2 · binds MET176, MET235, MET316
- 1E3Z · Acarbose complex of chimaeric amylase from B. amyloliquefaciens and B. licheniformis at… · GLD B2 · binds LYS68, GLY106, ALA107, TRP136
Residues it binds most
ASP 14, LEU 14, TRP 14, TYR 14, ALA 13, HIS 11, GLU 9, LYS 9, GLY 5, PHE 5 (residue and the binding sites it lines).
Found with
- ACI · 6-amino-4-hydroxymethyl-cyclohex-4-ene-1,2,3-triol
- CA · Calcium ion
- GLC · alpha-D-glucopyranose
- GAL · beta-D-galactopyranose
- NA · Sodium ion
- BGC · beta-D-glucopyranose
- G6D · alpha-D-quinovopyranose
- AC1 · 4,6-dideoxy-4-{[(1S,4R,5S,6S)-4,5,6-trihydroxy-3-(hydroxymethyl)cyclohex-2-en-1-yl]amino}-alpha-D-glucopyranose
- HSD · (1S,2S,3R,6R)-6-amino-4-(hydroxymethyl)cyclohex-4-ene-1,2,3-triol
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