Ligand · G6D

G6D · alpha-D-quinovopyranose

G6D, alpha-D-quinovopyranose (C6 H12 O5, 164.2 g/mol), in the MolNFT structures on GenesisL1: bound in 34 records (17 PDB entries). Every binding site with its residues within 4.5 Å, the residues it binds most and the ligands found with it.

Component: G6D
Formula: C6 H12 O5
Class: sugar
Structures: 34
PDB entries: 17

Binding sites

G6D in 34 structures; the first of them:

1A47 · Cgtase from thermoanaerobacterium thermosulfurigenes EM1 in complex with a maltohexaose… · G6D C3 · binds PHE184, LEU195, PHE196, ALA231, LYS233, HIS234, GLU258, PHE260 and 1 more
1AU1 · Human interferon-beta crystal structure · G6D C7 · binds GLN23, THR82, ILE83, ASN86
1B2Y · Structure of human pancreatic alpha-amylase in complex with the carbohydrate inhibitor… · G6D B4 · binds TRP59, GLN63, GLY104, THR163, GLY164, LEU165
1DTU · Bacillus circulans strain 251 cyclodextrin glycosyltransferase: a mutant Y89D/S146P… · G6D C2 · binds PHE183, LEU194, TYR195, ALA230, LYS232, HIS233, GLU257, PHE259 and 1 more
1KCK · Bacillus circulans strain 251 Cyclodextrin glycosyl transferase mutant N193G · G6D B2 · binds PHE183, LEU194, TYR195, ALA230, LYS232, HIS233, GLU257, PHE259 and 1 more
1MMY · Crystal structure of galactose mutarotase from Lactococcus lactis complexed with… · G6D A348 · binds TYR60, ARG71, HIS96, HIS170, TYR172, GLU203, ASP243, VAL277 and 2 more
1UA7 · Crystal Structure Analysis of Alpha-Amylase from Bacillus Subtilis complexed with Acarbose · G6D C2 · binds TRP130, LEU141, ALA177, LYS179, HIS180, GLU208, LEU210, ASP269
1UKQ · Crystal structure of cyclodextrin glucanotransferase complexed with a… · G6D C2 · binds PHE183, LEU194, TYR195, ALA230, LYS232, HIS233, GLU257, TRP258 and 1 more
2CXG · Cyclodextrin glycosyltransferase complexed to the inhibitor acarbose · G6D C2 · binds PHE183, LEU194, TYR195, ALA230, LYS232, HIS233, GLU257, PHE259 and 1 more
2DIJ · Complex of a Y195F mutant cgtase from B. circulans strain 251 complexed with a… · G6D E2 · binds PHE183, PHE195, ALA230, LYS232, HIS233, GLU257, PHE259, ASP328
3BC9 · Alpha-amylase B in complex with acarbose · G6D B2 · binds LYS198, GLY236, ALA237, TRP260
3BMW · Cyclodextrin glycosyl transferase from Thermoanerobacterium thermosulfurigenes EM1 mutant… · G6D C3 · binds PHE184, LEU195, PHE196, ALA231, LYS233, HIS234, GLU258, PHE260 and 1 more
3OLD · Crystal structure of alpha-amylase in complex with acarviostatin I03 · G6D C3 · binds TYR151, LEU162, ALA198, LYS200, HIS201, GLU233, ILE235, ASP300 and 1 more
3OLE · Structures of human pancreatic alpha-amylase in complex with acarviostatin II03 · G6D B2 · binds TRP59, GLN63, GLY104, THR163, LEU165
3OLG · Structures of human pancreatic alpha-amylase in complex with acarviostatin III03 · G6D B2 · binds TRP59, GLN63, GLY104, THR163, LEU165
3OLI · Structures of human pancreatic alpha-amylase in complex with acarviostatin IV03 · G6D B2 · binds TRP59, GLN63, GLY104, THR163, LEU165
4E2O · Crystal structure of alpha-amylase from Geobacillus thermoleovorans, GTA, complexed with… · G6D B2 · binds TRP105, TYR147, TYR182, ASP362
1A47 · Cgtase from thermoanaerobacterium thermosulfurigenes EM1 in complex with a maltohexaose… · G6D C3 · binds PHE184, LEU195, PHE196, ALA231, LYS233, HIS234, GLU258, PHE260 and 1 more
1AU1 · Human interferon-beta crystal structure · G6D C7 · binds GLN23, THR82, ILE83, ASN86
1B2Y · Structure of human pancreatic alpha-amylase in complex with the carbohydrate inhibitor… · G6D B4 · binds TRP59, GLN63, GLY104, THR163, GLY164, LEU165
1DTU · Bacillus circulans strain 251 cyclodextrin glycosyltransferase: a mutant Y89D/S146P… · G6D C2 · binds PHE183, LEU194, TYR195, ALA230, LYS232, HIS233, GLU257, PHE259 and 1 more
1KCK · Bacillus circulans strain 251 cyclodextrin glycosyl transferase mutant N193G · G6D B2 · binds PHE183, LEU194, TYR195, ALA230, LYS232, HIS233, GLU257, PHE259 and 1 more
1MMY · Crystal structure of galactose mutarotase from lactococcus lactis complexed with… · G6D A348 · binds TYR60, ARG71, HIS96, HIS170, TYR172, GLU203, ASP243, VAL277 and 2 more
1UA7 · Crystal structure analysis of alpha-amylase from bacillus subtilis complexed with acarbose · G6D C2 · binds TRP130, LEU141, ALA177, LYS179, HIS180, GLU208, LEU210, ASP269
1UKQ · Crystal structure of cyclodextrin glucanotransferase complexed with a… · G6D C2 · binds PHE183, LEU194, TYR195, ALA230, LYS232, HIS233, GLU257, TRP258 and 1 more
2CXG · Cyclodextrin glycosyltransferase complexed to the inhibitor acarbose · G6D C2 · binds PHE183, LEU194, TYR195, ALA230, LYS232, HIS233, GLU257, PHE259 and 1 more
2DIJ · Complex of a Y195F mutant cgtase from B. circulans strain 251 complexed with a… · G6D E2 · binds PHE183, PHE195, ALA230, LYS232, HIS233, GLU257, PHE259, ASP328
3BC9 · Alpha-amylase B in complex with acarbose · G6D B2 · binds LYS198, GLY236, ALA237, TRP260
3BMW · Cyclodextrin glycosyl transferase from thermoanerobacterium thermosulfurigenes EM1 mutant… · G6D C3 · binds PHE184, LEU195, PHE196, ALA231, LYS233, HIS234, GLU258, PHE260 and 1 more
3OLD · Crystal structure of alpha-amylase in complex with acarviostatin I03 · G6D C3 · binds TYR151, LEU162, ALA198, LYS200, HIS201, GLU233, ILE235, ASP300 and 1 more

Residues it binds most

PHE 20, GLU 32, HIS 32, LEU 32, ASP 32, TYR 26, ALA 28, LYS 26, TRP 20, GLY 18 (residue and the binding sites it lines).

Found with

CA · Calcium ion
GLC · alpha-D-glucopyranose
BGC · beta-D-glucopyranose
ACI · 6-amino-4-hydroxymethyl-cyclohex-4-ene-1,2,3-triol
CL · Chloride ion
SO4 · Sulfate ion
PCA · Pyroglutamic acid
ADH · 1-amino-2,3-dihydroxy-5-hydroxymethyl cyclohex-5-ene
MPD · (4S)-2-methyl-2,4-pentanediol
AC1 · 4,6-dideoxy-4-{[(1S,4R,5S,6S)-4,5,6-trihydroxy-3-(hydroxymethyl)cyclohex-2-en-1-yl]amino}-alpha-D-glucopyranose
HSD · (1S,2S,3R,6R)-6-amino-4-(hydroxymethyl)cyclohex-4-ene-1,2,3-triol
NA · Sodium ion

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