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Ligand · GDF

GDF · Vinorelbine

GDF, Vinorelbine (C45 H54 N4 O8, 779.0 g/mol), in the MolNFT structures on GenesisL1: bound in 2 records (1 PDB entry). Every binding site with its residues within 4.5 Å, the residues it binds most and the ligands found with it.

Component
GDF
Formula
C45 H54 N4 O8
Class
ligand
Structures
2
PDB entries
1

Binding sites

GDF in 2 structures; the first of them:

  • 7CNN · vinorelbine in complex with tubulin · GDF B507 · binds PRO175, LYS176, VAL177, ASP179, TYR210, PHE214, THR220, THR221 and 14 more
  • 7CNN · Vinorelbine in complex with tubulin · GDF B507 · binds PRO175, LYS176, VAL177, ASP179, TYR210, PHE214, THR220, THR221 and 14 more

Residues it binds most

LYS 2, PRO 2, THR 2, VAL 2, ILE 2, PHE 2, TYR 2, ALA 2, ASN 2, ASP 2 (residue and the binding sites it lines).

Found with

  • GDP · Guanosine-5'-diphosphate
  • GTP · Guanosine-5'-triphosphate
  • CA · Calcium ion
  • MG · Magnesium ion
  • CL · Chloride ion
  • MES · 2-(N-morpholino)-ethanesulfonic acid

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