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Ligand · GCB

GCB · (2S,3S,4S,5R)-3,4,5-trihydroxy-6-oxo-oxane-2-carboxylic acid

GCB, (2S,3S,4S,5R)-3,4,5-trihydroxy-6-oxo-oxane-2-carboxylic acid (C6 H8 O7, 192.1 g/mol), in the MolNFT structures on GenesisL1: bound in 5 records (3 PDB entries). Every binding site with its residues within 4.5 Å, the residues it binds…

Component
GCB
Formula
C6 H8 O7
Class
ligand
Structures
5
PDB entries
3

Binding sites

GCB in 5 structures; the first of them:

  • 6D41 · Bacteriodes uniformis beta-glucuronidase 1 bound to D-glucaro-1,5-lactone · GCB B705 · binds ASP189, HIS357, TYR382, ASN420, GLU421, ASN478, TYR480, TYR484 and 6 more
  • 6D50 · Bacteroides uniforms beta-glucuronidase 2 bound to D-glucaro-1,5-lactone · GCB A903 · binds ASP166, HIS363, ASN425, GLU426, ASN493, TYR495, TYR499, GLU526 and 5 more
  • 6D41 · Bacteriodes uniformis beta-glucuronidase 1 bound to D-glucaro-1,5- lactone · GCB B705 · binds ASP189, HIS357, TYR382, ASN420, GLU421, ASN478, TYR480, TYR484 and 6 more
  • 6D50 · Bacteroides uniforms beta-glucuronidase 2 bound to D-glucaro-1,5- lactone · GCB A903 · binds ASP166, HIS363, ASN425, GLU426, ASN493, TYR495, TYR499, GLU526 and 5 more
  • 6JZ8 · B-glucuronidase from ruminococcus gnavus in complex with D-glucaro 1, 5-lactone · GCB A701 · binds ASP167, HIS335, ASN417, GLU418, ASN472, TYR474, TYR478, GLU512 and 5 more

Residues it binds most

ASN 10, TYR 10, GLU 10, ARG 10, ASP 10, HIS 10, LYS 10, PHE 10, TRP 10 (residue and the binding sites it lines).

Found with

  • CA · Calcium ion
  • NA · Sodium ion
  • CL · Chloride ion
  • GOL · Glycerol

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