MolNFT v1 · #146015 · protein
Bacteroides uniforms beta-glucuronidase 2 bound to D-glucaro-1,5- lactone
6D50: “Bacteroides uniforms beta-glucuronidase 2 bound to D-glucaro-1,5- lactone”. X-ray diffraction, 3 ligands (GCB, CA, NA). MolNFT v1 #146015 on GenesisL1: 3D structure, binding sites and pockets in GL1X.
- PDB
- 6D50
- Type
- protein
- Length
- 1,677 residues
- Chains
- 2
- Method
- x-ray diffraction
- Collection
- MolNFT v1 / PDB
- Contract
- 0xDE3723766Bc32dcACD03C17BaA400A7B36837Eba
- Owner
- 0x3396CDB397284571d12822B4ae1189a8E22AAAAA
- UniProt
- A0A078SUX9
- Ligands
- GCB, CA, NA
Structure
x-ray diffraction · 2 distinct chains.
| Chain | Molecule | Type | Residues | Secondary structure | UniProt |
|---|---|---|---|---|---|
| A | — | protein | 837 | — | A0A078SUX9 |
| B | — | protein | 840 | — | A0A078SUX9 |
Ligands and binding sites
- GCB · (2S,3S,4S,5R)-3,4,5-trihydroxy-6-oxo-oxane-2-carboxylic acid · ligand · 2 copies · chains A, B
- CA · Calcium ion · metal · 2 copies · chains A, B
- NA · Sodium ion · metal · 2 copies · chains A, B
Binding sites are the residues within 4.5 Å of a ligand's heavy atoms.
Compared structures
- 6D50 · Bacteroides uniforms beta-glucuronidase 2 bound to D-glucaro-1,5-lactone · the same entry in another collection · chain A against A, TM-score 1.00
Analyse
- Open in the research workbench: secondary structure, accessibility, pockets, interfaces, conservation, variants, modifications, peptides and crosslinks on the 3D structure
- Every structure of UniProt A0A078SUX9
- Elsewhere: RCSB PDB 6D50 · PDBe 6D50 · UniProt A0A078SUX9
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