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Ligand · DVA

DVA · D-valine

DVA, D-valine (C5 H11 N O2, 117.2 g/mol), in the MolNFT structures on GenesisL1: bound in 5 records (4 PDB entries). Every binding site with its residues within 4.5 Å, the residues it binds most and the ligands found with it.

Component
DVA
Formula
C5 H11 N O2
Class
ligand
Structures
5
PDB entries
4

Binding sites

DVA in 5 structures; the first of them:

  • 3VNS · Co-crystal structure of NRPS adenylation protein CytC1 with D-valine and AMP from… · DVA A602 · binds PHE207, ASP208, PHE209, GLY280, GLY281, GLY308, ILE309, THR310 and 3 more
  • 3VNS · Co-crystal structure of nrps adenylation protein CYTC1 with D-valine and AMP from… · DVA A602 · binds PHE207, ASP208, PHE209, GLY280, GLY281, GLY308, ILE309, THR310 and 3 more
  • 4JNA · Crystal structure of the deph complex with dimethyl-FK228 · DVA H2 · binds MET270, PRO288, LEU289, THR313, HIS314, ARG315, GLY316, DBU4
  • 6ECE · VLM2 thioesterase domain with genetically encoded 2,3-diaminopropionic acid bound with a… · DVA C3010 · binds ALA2501, PHE2513, PHE2564, GLN2568, VAL3012
  • 6ECF · VLM2 thioesterase domain with genetically encoded 2,3-diaminopropionic acid bound with a… · DVA G3010 · binds PHE2513, GLN2568, VAL3012

Residues it binds most

PHE 5, GLY 4, VAL 5, THR 4, ASP 3, ARG 2, GLN 2, HIS 2, ILE 2, LYS 2 (residue and the binding sites it lines).

Found with

  • 2OP · (2S)-2-hydroxypropanoic acid
  • AMP · Adenosine monophosphate
  • 060 · S-methyl-D-cysteine
  • 1KC · (3S)-7-methylsulfanyl-3-oxidanyl-hept-4-enoic acid
  • FAD · Flavin-adenine dinucleotide
  • VAD · Deaminohydroxyvaline
  • CL · Chloride ion
  • PO4 · Phosphate ion
  • EDO · 1,2-ethanediol
  • GOL · Glycerol

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