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Ligand · 2OP

2OP · (2S)-2-hydroxypropanoic acid

2OP, (2S)-2-hydroxypropanoic acid (C3 H6 O3, 90.1 g/mol), in the MolNFT structures on GenesisL1: bound in 23 records (17 PDB entries). Every binding site with its residues within 4.5 Å, the residues it binds most and the ligands found with…

Component
2OP
Formula
C3 H6 O3
Class
ligand
Structures
23
PDB entries
17

Binding sites

2OP in 23 structures; the first of them:

  • 5GZY · The complex structure of D-2-haloacid dehalogenase with L-LA · 2OP A401 · binds TRP48, GLY50, VAL51, ILE52, ASN131, TYR134, ASN203, SER204 and 5 more
  • 5IHD · Calcium(II) and copper(II) bound to the Z-DNA form of d(CGCGCG), complexed by L-lactate… · 2OP A103 · binds DG2, DC1, DG2
  • 5ZZY · The crystal structure of Mandelate oxidase mutant Y128F with L-Lactate · 2OP A402 · binds PHE24, ALA79, LEU108, PHE128, MET160, ARG163, HIS252, ARG255
  • 6HCL · Crystal structure of a MFS transporter with Ligand at 2.69 Angstroem resolution · 2OP A501 · binds TYR119, LEU145, ARG280, TYR331, PHE335, PHE359
  • 6LZ0 · Cryo-EM structure of human MCT1 in complex with Basigin-2 in the presence of lactate · 2OP A601 · binds LYS38, SER154, PHE278, LEU281, ARG313, PHE367
  • 7E9Y · Crystal structure of eLACCO1 · 2OP A602 · binds PHE77, LEU79, TYR80, ASN137, ARG157, PRO159, ASP444, PHE445 and 3 more
  • 7F20 · L-lactate oxidase with L-lactate · 2OP A402 · binds TYR40, ALA95, TYR124, TYR146, ARG181, TYR191, LEU211, TYR215 and 2 more
  • 7F6E · Crystal structure of metal-citrate-binding protein (MctA) of ABC transporter endogenously… · 2OP A419 · binds ASN103, TRP104, PRO105, ARG285, ARG286, GLU287
  • 7ZZP · Structure of HDAC2 complexed with an inhibitory ligand · 2OP A612 · binds MET35, GLY143, LEU144, HIS145, HIS146, GLY154, PHE155, CYS156 and 6 more
  • 8F8O · Crystal Structure of the Succinyl-diaminopimelate Desuccinylase (DapE) from Acinetobacter… · 2OP A404 · binds GLU135, GLU136, ARG259, GLY325, THR326, SER327, ARG330, HIS195 and 1 more
  • 8HLW · Crystal structure of SIRT3 in complex with H4K16la peptide · 2OP B401 · binds PHE157, PHE180, GLN228, ILE230, HIS248, ILE291, VAL292, VAL324 and 1 more
  • 8HLY · Crystal structure of SIRT3 in complex with H3K23la peptide · 2OP B401 · binds PHE157, PHE180, GLN228, ILE230, HIS248, ILE291, VAL292, LYS23
  • 8Z03 · Lactate bound to human GTP-specific succinyl-CoA synthetase · 2OP B401 · binds ILE145, THR164, TYR167, ASN271, GLY272, LEU296, GLY297, GLY298 and 5 more
  • 5S4D · Pandda analysis group deposition -- crystal structure of SARS-cov-2 NSP3 macrodomain in… · 2OP A501 · binds ALA129, GLY130, VAL155, PHE156, ASP157, LEU160
  • 5ZZY · The crystal structure of mandelate oxidase mutant Y128F with L-lactate · 2OP A402 · binds PHE24, PHE128, ARG163, HIS252, ARG255
  • 6ECD · VLM2 thioesterase domain with genetically encoded 2,3-diaminopropionic acid bound with a… · 2OP B3011 · binds DPP2463, LEU2495, LEU2572, VAL3012
  • 6ECE · VLM2 thioesterase domain with genetically encoded 2,3-diaminopropionic acid bound with a… · 2OP C3011 · binds DPP2463, PRO2499, VAL2500, ALA2501, HIS2625, DVA3010, VAL3012
  • 6ECF · VLM2 thioesterase domain with genetically encoded 2,3-diaminopropionic acid bound with a… · 2OP G3011 · binds DPP2463, HIS2625, DVA3010, VAL3012
  • 6HCL · Crystal structure of a mfs transporter with ligand at 2.69 angstroem resolution · 2OP A501 · binds TYR119, LEU145, ARG280, TYR331, PHE335, PHE359
  • 6LZ0 · Cryo-EM structure of human MCT1 in complex with basigin-2 in the presence of lactate · 2OP A601 · binds LYS38, SER154, PHE278, LEU281, ARG313, PHE367
  • 7E9Y · Crystal structure of ELACCO1 · 2OP A602 · binds PHE77, LEU79, TYR80, ASN137, ARG157, PRO159, ASP444, PHE445 and 2 more
  • 7F20 · L-lactate oxidase with L-lactate · 2OP A402 · binds TYR40, TYR124, TYR146, ARG181, TYR191, LEU211, TYR215, HIS265 and 1 more

Residues it binds most

TYR 20, PHE 25, ARG 20, LEU 21, HIS 19, GLY 11, VAL 17, ASN 13, ASP 10, ILE 8 (residue and the binding sites it lines).

Found with

  • FMN · Flavin mononucleotide
  • CA · Calcium ion
  • ZN · Zinc ion
  • EDO · 1,2-ethanediol
  • MG · Magnesium ion
  • CIT · Citric acid
  • GOL · Glycerol
  • BNG · nonyl beta-D-glucopyranoside
  • CL · Chloride ion
  • CO2 · Carbon dioxide
  • DMS · Dimethyl sulfoxide
  • PG4 · Tetraethylene glycol

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