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Ligand · DGL

DGL · D-glutamic acid

DGL, D-glutamic acid (C5 H9 N O4, 147.1 g/mol), in the MolNFT structures on GenesisL1: bound in 9 records (9 PDB entries). Every binding site with its residues within 4.5 Å, the residues it binds most and the ligands found with it.

Component
DGL
Formula
C5 H9 N O4
Class
ligand
Structures
9
PDB entries
9

Binding sites

DGL in 9 structures; the first of them:

  • 6G7N · Trichodesmium Tery_3377 (IdiA) (FutA) with iron and alanine ligand. · DGL A402 · binds SER11, ARG12, TYR14, THR60, VAL61, ARG65, ARG104, TYR144 and 3 more
  • 7FSG · SDCBP PanDDA analysis group deposition -- The PDZ domans of SDCBP in complex with… · DGL B304 · binds LYS130, SER131, ILE132, ASP133, SER170, SER171, HIS277, ARG281
  • 7FSK · SDCBP PanDDA analysis group deposition -- The PDZ domans of SDCBP in complex with… · DGL B304 · binds LYS130, SER131, ILE132, ASP133, SER170, SER171, HIS277, ARG281
  • 7FSP · SDCBP PanDDA analysis group deposition -- The PDZ domans of SDCBP in complex with… · DGL B304 · binds LYS130, SER131, SER170, SER171, HIS277, ARG281
  • 7FSX · SDCBP PanDDA analysis group deposition -- The PDZ domans of SDCBP in complex with… · DGL B304 · binds LYS130, SER131, SER170, SER171, HIS277, ARG281
  • 8EB3 · Crystal structure of glutamate racemase from Helicobacter pylori in complex with a… · DGL A305 · binds ASP7, SER8, VAL37, PRO38, TYR39, GLY40, CYS70, ASN71 and 8 more
  • 8JX4 · Structure of the catalytic domain of pseudomurein endo-isopeptidases PeiW · DGL A201 · binds ARG85, TRP93, GLN134, VAL144
  • 8TBA · Crystal structure of Helicobacter pylori glutamate racemase bound to D-glutamate and a… · DGL A302 · binds ASP7, SER8, VAL37, PRO38, TYR39, GLY40, CYS70, ASN71 and 7 more
  • 8UDI · Crystal structure of Helicobacter pylori glutamate racemase bound to D-glutamate and a… · DGL A301 · binds ASP7, SER8, VAL37, PRO38, TYR39, GLY40, CYS70, ASN71 and 7 more

Residues it binds most

SER 15, THR 7, VAL 12, HIS 15, ARG 12, GLY 10, ASP 12, CYS 6, TYR 8, LYS 10 (residue and the binding sites it lines).

Found with

  • ALA · Alanine
  • GLY · Glycine
  • SO4 · Sulfate ion
  • EDO · 1,2-ethanediol
  • CL · Chloride ion
  • DMS · Dimethyl sulfoxide
  • DAL · D-alanine
  • I8A · N-(cyclopropylmethyl)-2,2,3,3-tetramethylazetidine-1-carboxamide
  • NZ1 · 5-methoxy-1,3-benzothiazol-2-amine
  • VW7 · N-(8-methyl-1,2,3,4-tetrahydroquinolin-5-yl)acetamide
  • WAW · N-{[(3S)-2-(3-fluoropyrazin-2-yl)-1,2,3,4-tetrahydroisoquinolin-3-yl]methyl}-1H-indazole-4-carboxamide
  • WFI · 1-[4-methyl-2-(pyridin-4-yl)-1,3-thiazol-5-yl]methanamine

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