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Ligand · AFB

AFB · 1,6,7,8,9,11A,12,13,14,14A-decahydro-1,13-dihydroxy-6-methyl-4H-cyclopent[f]oxacyclotridecin-4-one

AFB, 1,6,7,8,9,11A,12,13,14,14A-decahydro-1,13-dihydroxy-6-methyl-4H-cyclopent[f]oxacyclotridecin-4-one (C16 H24 O4, 280.4 g/mol), in the MolNFT structures on GenesisL1: bound in 3 records (3 PDB entries). Every binding site with its…

Component
AFB
Formula
C16 H24 O4
Class
ligand
Structures
3
PDB entries
3

Binding sites

AFB in 3 structures; the first of them:

  • 1R8Q · Full-length ARF1-GDP-mg in complex with brefeldin a and a SEC7 domain · AFB A403 · binds PHE51, VAL53, THR64, VAL65, TRP66, ASP67, ILE74, TRP78 and 7 more
  • 1RE0 · Structure of ARF1-GDP bound to Sec7 domain complexed with Brefeldin A · AFB A702 · binds PHE51, ASN52, VAL53, GLU54, THR64, VAL65, TRP66, ASP67 and 9 more
  • 1S9D · ARF1[DELTA 1-17]-GDP-mg in complex with brefeldin a and a SEC7 domain · AFB A403 · binds MET18, PHE51, VAL53, THR64, VAL65, TRP66, ASP67, ILE74 and 8 more

Residues it binds most

VAL 4, ASP 4, THR 4, TRP 4, TYR 4, MET 4, ILE 4, PHE 4, ALA 3, ASN 2 (residue and the binding sites it lines).

Found with

  • MG · Magnesium ion
  • GDP · Guanosine-5'-diphosphate
  • G3D · Guanosine-3'-monophosphate-5'-diphosphate
  • ZN · Zinc ion
  • CIT · Citric acid

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