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Ligand · 10M

10M · decyl 4-O-alpha-D-glucopyranosyl-1-thio-beta-D-glucopyranoside

10M, decyl 4-O-alpha-D-glucopyranosyl-1-thio-beta-D-glucopyranoside (C22 H42 O10 S, 498.6 g/mol), in the MolNFT structures on GenesisL1: bound in 3 records (3 PDB entries). Every binding site with its residues within 4.5 Å, the residues it…

Component
10M
Formula
C22 H42 O10 S
Class
sugar
Structures
3
PDB entries
3

Binding sites

10M in 3 structures; the first of them:

  • 5GUW · Complex of Cytochrome cd1 Nitrite Reductase and Nitric Oxide Reductase in Denitrification… · 10M A203 · binds ASN138, GLN139, PRO142, TRP262, LEU270, TRP271, SER274, LEU331 and 4 more
  • 5GUX · Cytochrome c-dependent nitric oxide reductase (cNOR) from Pseudomonas aeruginosa in… · 10M B812 · binds TRP262, LEU270, TRP271, SER274, LEU331, ALA332, PRO333, TYR336 and 4 more
  • 8BGW · CryoEM structure of quinol-dependent Nitric Oxide Reductase (qNOR) from Alcaligenes… · 10M A805 · binds LYS124, ARG128, SER208, GLY222, HIS224, PRO225, SER226, SER227 and 14 more

Residues it binds most

VAL 4, PRO 6, SER 5, TYR 7, LEU 5, TRP 3, ALA 5, HIS 2, MET 2, ASN 3 (residue and the binding sites it lines).

Found with

  • HEM · Protoporphyrin IX containing Fe
  • CA · Calcium ion
  • FE · Fe (III) ion
  • HEC · Heme C
  • O · Oxygen atom
  • DHE · Heme D
  • LOP · (1R)-2-{[(R)-(2-aminoethoxy)(hydroxy)phosphoryl]oxy}-1-[(dodecanoyloxy)methyl]ethyl (9Z)-octadec-9-enoate
  • UQ1 · Ubiquinone-1
  • CL · Chloride ion
  • XE · Xenon

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